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The map label for this gene is sbcD [C]

Identifier: 158422836

GI number: 158422836

Start: 1356647

End: 1357768

Strand: Reverse

Name: sbcD [C]

Synonym: AZC_1212

Alternate gene names: 158422836

Gene position: 1357768-1356647 (Counterclockwise)

Preceding gene: 158422841

Following gene: 158422835

Centisome position: 25.29

GC content: 72.64

Gene sequence:

>1122_bases
ATGCGCCTGATTCACTCGGCCGACTGGCAACTGGGCAAACCGTTCGGCCGCATGCCGGTGGACGCCCGCGCCGCCTTGAG
CGAGGCCCGCCTCGACGCCATCGACACGCTCGCCGCCGCCGCCCGGCAGCACCGGGCCGGCCATGTTCTCGTGGCCGGCG
ACGTCTTCGACAGCGCCGAGCCGGGCGACCGCATCTATCGGCAGGCGCTCGCACGCATGAAGGCGGCGGCCGGCGTGCGC
TGGTGGCTGCTGCCCGGCAATCACGATCCGCTCCGTCCGGACGGGCTCTGGAGCCGCCTCTCCGCCGAGGCGCCAGAGAA
TGTCGCCGCCTGCCTCACGCCCGCTCCGGTGATGCTGGGCGAGGATGCGGTGCTGCTGCCGGCCCCCCTCACGCACAAGT
TCAGCCTCTCCGACCCCACCGCCTGGTTCGATGGCGCCGAGACGCCCGCCGGCCTGCCGCGCATCGGCCTGGCCCATGGC
GCCATCCGCACCTTCGGCGGTGACGAGCAGACGAATCTGATCGCGCCGGATCGGGCCCGCCGGGCCGGCCTCTCTTATCT
CGCGCTTGGCGATTGGCACGGCCTGCGGAAGATCGATGGCCATACCTATTACAGCGGCACGCCGGAGCCGGACGATTTCG
GCCGGGAGGCGACGGGCCTCGCCCTGCTGGTGGATGTGGCCGGCGCCGGTCTCGAGCCGCAGGTGGAGGCGCTGCCCATC
GGCCGTCACGCCTGGGTGGAGGAGCGCTGGCACCTGTCTGGCGCCGAAGACGTCGCGCCGCGCATCGCGGCGCTCGCCCC
CGGCATCGAGCGCAAGCATCTGGTGGCACGGCTGCATCTGTCCGGGCTCGTGCCGCTGGCCGAGCGCGTCACCCTGCGCC
GGCTGCTGGAGGACGGGCTCGCCCATGAGATCCGCTGGCTCGACCTTGATCTGGCGGACCTCATGACACGCCCAACCGAA
ACCGACCTCTCCGAGATCGACGCCCACGGCGAACTGCGCGACGCCGCCGAGCGCCTTCGGGCCATGGCGGAGGACGGCGG
CACCGAGGGCCGGCTGGCCGGGGCCGCGCTGGAGCGCCTCTATGTGGAACTGATGCGCGCCCAGCGCGGGAGCGAAGCCT
GA

Upstream 100 bases:

>100_bases
GCACGCGGGCCACAGGCGCCGCGGCTCGCCCCTTGTGACGCCAAGGTTTTGCCCTGATGCAGGCCGGCCCGTTTCCGCCT
GATTGCGCTATAGAGAGACC

Downstream 100 bases:

>100_bases
TGCGCATCCGCCGCCTCTCCATCGAGAACTTCCGCAAGTTCCGTGCACCCGTAGTGCTCGACGGCTTCTCCGATGGCCTC
AACCTCGTCTGCGAGCCCAA

Product: exonuclease

Products: NA

Alternate protein names: DNA Repair Exonuclease; Exonuclease; Exonuclease SbcD; Ser/Thr Protein Phosphatase Family Protein; Exonuclease SbcD Family Protein; Calcineurin-Like Phosphoesterase Family; DNA Repair Exonuclease Or Phosphoesterase; DNA Repair Exonuclease SbcD

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRLIHSADWQLGKPFGRMPVDARAALSEARLDAIDTLAAAARQHRAGHVLVAGDVFDSAEPGDRIYRQALARMKAAAGVR
WWLLPGNHDPLRPDGLWSRLSAEAPENVAACLTPAPVMLGEDAVLLPAPLTHKFSLSDPTAWFDGAETPAGLPRIGLAHG
AIRTFGGDEQTNLIAPDRARRAGLSYLALGDWHGLRKIDGHTYYSGTPEPDDFGREATGLALLVDVAGAGLEPQVEALPI
GRHAWVEERWHLSGAEDVAPRIAALAPGIERKHLVARLHLSGLVPLAERVTLRRLLEDGLAHEIRWLDLDLADLMTRPTE
TDLSEIDAHGELRDAAERLRAMAEDGGTEGRLAGAALERLYVELMRAQRGSEA

Sequences:

>Translated_373_residues
MRLIHSADWQLGKPFGRMPVDARAALSEARLDAIDTLAAAARQHRAGHVLVAGDVFDSAEPGDRIYRQALARMKAAAGVR
WWLLPGNHDPLRPDGLWSRLSAEAPENVAACLTPAPVMLGEDAVLLPAPLTHKFSLSDPTAWFDGAETPAGLPRIGLAHG
AIRTFGGDEQTNLIAPDRARRAGLSYLALGDWHGLRKIDGHTYYSGTPEPDDFGREATGLALLVDVAGAGLEPQVEALPI
GRHAWVEERWHLSGAEDVAPRIAALAPGIERKHLVARLHLSGLVPLAERVTLRRLLEDGLAHEIRWLDLDLADLMTRPTE
TDLSEIDAHGELRDAAERLRAMAEDGGTEGRLAGAALERLYVELMRAQRGSEA
>Mature_373_residues
MRLIHSADWQLGKPFGRMPVDARAALSEARLDAIDTLAAAARQHRAGHVLVAGDVFDSAEPGDRIYRQALARMKAAAGVR
WWLLPGNHDPLRPDGLWSRLSAEAPENVAACLTPAPVMLGEDAVLLPAPLTHKFSLSDPTAWFDGAETPAGLPRIGLAHG
AIRTFGGDEQTNLIAPDRARRAGLSYLALGDWHGLRKIDGHTYYSGTPEPDDFGREATGLALLVDVAGAGLEPQVEALPI
GRHAWVEERWHLSGAEDVAPRIAALAPGIERKHLVARLHLSGLVPLAERVTLRRLLEDGLAHEIRWLDLDLADLMTRPTE
TDLSEIDAHGELRDAAERLRAMAEDGGTEGRLAGAALERLYVELMRAQRGSEA

Specific function: Sbccd Cleaves DNA Hairpin Structures. These Structures Can Inhibit DNA Replication And Are Intermediates In Certain DNA Recombination Reactions. The Complex Acts As A 3'->5' Double Strand Exonuclease That Can Open Hairpins. It Also Has A 5' Single-Strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40418; Mature: 40418

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIHSADWQLGKPFGRMPVDARAALSEARLDAIDTLAAAARQHRAGHVLVAGDVFDSAE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
PGDRIYRQALARMKAAAGVRWWLLPGNHDPLRPDGLWSRLSAEAPENVAACLTPAPVMLG
CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHCCCCCEEEC
EDAVLLPAPLTHKFSLSDPTAWFDGAETPAGLPRIGLAHGAIRTFGGDEQTNLIAPDRAR
CCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
RAGLSYLALGDWHGLRKIDGHTYYSGTPEPDDFGREATGLALLVDVAGAGLEPQVEALPI
HHCCCEEEECCCCCCEECCCCEEECCCCCCHHCCCCCCCCEEEEEECCCCCCCCCEEECC
GRHAWVEERWHLSGAEDVAPRIAALAPGIERKHLVARLHLSGLVPLAERVTLRRLLEDGL
CHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AHEIRWLDLDLADLMTRPTETDLSEIDAHGELRDAAERLRAMAEDGGTEGRLAGAALERL
HHHEEEEECCHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YVELMRAQRGSEA
HHHHHHHHCCCCC
>Mature Secondary Structure
MRLIHSADWQLGKPFGRMPVDARAALSEARLDAIDTLAAAARQHRAGHVLVAGDVFDSAE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
PGDRIYRQALARMKAAAGVRWWLLPGNHDPLRPDGLWSRLSAEAPENVAACLTPAPVMLG
CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHCCCCCEEEC
EDAVLLPAPLTHKFSLSDPTAWFDGAETPAGLPRIGLAHGAIRTFGGDEQTNLIAPDRAR
CCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
RAGLSYLALGDWHGLRKIDGHTYYSGTPEPDDFGREATGLALLVDVAGAGLEPQVEALPI
HHCCCEEEECCCCCCEECCCCEEECCCCCCHHCCCCCCCCEEEEEECCCCCCCCCEEECC
GRHAWVEERWHLSGAEDVAPRIAALAPGIERKHLVARLHLSGLVPLAERVTLRRLLEDGL
CHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AHEIRWLDLDLADLMTRPTETDLSEIDAHGELRDAAERLRAMAEDGGTEGRLAGAALERL
HHHEEEEECCHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YVELMRAQRGSEA
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA