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The map label for this gene is nodB [H]

Identifier: 158422684

GI number: 158422684

Start: 1189435

End: 1190397

Strand: Reverse

Name: nodB [H]

Synonym: AZC_1060

Alternate gene names: 158422684

Gene position: 1190397-1189435 (Counterclockwise)

Preceding gene: 158422692

Following gene: 158422683

Centisome position: 22.17

GC content: 69.16

Gene sequence:

>963_bases
GTGCCCCGTCTCTCTTCCTCCCTTCTCCTCGCCCTTCCCCTCTGCCTCGCTGCCGGTGCCGCCGTGGCCGCGCCCGCCTG
CTATGCGCCTTCGGCCCTCAAGGCCGTGCCGGGCGAGGAGAAGGTCCAGCCCCACACCTCCAGCGGCAACACGCTGGCCG
AGCGTCTCCTGCCGCCCGTGCGGCCGGTGGCAGGGGCGCTGGCCGGTTCCATCCGGCGGGTGAACCTGCCGGCGGGCGTG
AAGATGGTAGCCCTCACCTTCGACCTGTGCGAGGCCTCCAGCGAGGTCTCCGGCTATGACGGCGCGCTGGTGGATTATCT
GCGCGACCAGAACGTCCAAGCCACGTTCTTCGCCGGCGGCAAATGGGCGGTGAGCCATCCCGAGCGGGCGTCCCAGATCA
TCGCCGATCCGCTGTTCGAAGTGGGCAACCACACCTGGTCCCACGCCAACATGACGGTGACCACCGGCACCACCATGCAG
CGGCAGGTGGATGATGCCGACATGGCCATCGCCGCCCGCCGCGCGGGGGCGCAGGCCGCCGGCTGCAACGTCGCGGATGT
GCCGGAGCGCACCACCCTCTTCCGCTTTCCCTATGGCTCGTGCTCCGCCGATTCCATGGCCTATGTGAACGAGACCGGCC
ATCTGGCCATCCAGTGGGACGTGGATTCCGGCGACCCCGCCTTCCTCGGCGCGAAATTCATGGCCGAGGCCATGCTCAAA
GCCATCAAGCCCGGCTCCATCGTGCTCATGCACGCCAACGGGCGCGGCAAGCACACGGCGGAAGCCCTGCGCATCCTCAT
TCCGGCGCTCAAGGCCAAGGGGTACCAGTTCGCCACCGTGAGCCAGCTCATCGCCGCCGGCACGCCGGTGATCGCCGCCA
CCTGCTATTCCGAGCGCCCCGGCGACACCAAGGTCTATGACGATGCCGCACGCGCCGGCCGCCGCATCCTGCCGACGCAG
TAG

Upstream 100 bases:

>100_bases
GGCGTCCCCGGCACTCACATCCTGCCCTTCATGTCACCCTTGCCGCCATGGGCGCATCGTGCAACGTCCGGTCGAGCTTC
CGCTGACTGCGTCGTGATCC

Downstream 100 bases:

>100_bases
GGGCGAGCGGTCAGATCGATCGTTCGCTATGACTATCAGCCGAGAGCGCGATTCCGGCCGCCGGGCCGGACGCCCCGACC
GCCAGAGGACCGTCCGCCAT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MPRLSSSLLLALPLCLAAGAAVAAPACYAPSALKAVPGEEKVQPHTSSGNTLAERLLPPVRPVAGALAGSIRRVNLPAGV
KMVALTFDLCEASSEVSGYDGALVDYLRDQNVQATFFAGGKWAVSHPERASQIIADPLFEVGNHTWSHANMTVTTGTTMQ
RQVDDADMAIAARRAGAQAAGCNVADVPERTTLFRFPYGSCSADSMAYVNETGHLAIQWDVDSGDPAFLGAKFMAEAMLK
AIKPGSIVLMHANGRGKHTAEALRILIPALKAKGYQFATVSQLIAAGTPVIAATCYSERPGDTKVYDDAARAGRRILPTQ

Sequences:

>Translated_320_residues
MPRLSSSLLLALPLCLAAGAAVAAPACYAPSALKAVPGEEKVQPHTSSGNTLAERLLPPVRPVAGALAGSIRRVNLPAGV
KMVALTFDLCEASSEVSGYDGALVDYLRDQNVQATFFAGGKWAVSHPERASQIIADPLFEVGNHTWSHANMTVTTGTTMQ
RQVDDADMAIAARRAGAQAAGCNVADVPERTTLFRFPYGSCSADSMAYVNETGHLAIQWDVDSGDPAFLGAKFMAEAMLK
AIKPGSIVLMHANGRGKHTAEALRILIPALKAKGYQFATVSQLIAAGTPVIAATCYSERPGDTKVYDDAARAGRRILPTQ
>Mature_319_residues
PRLSSSLLLALPLCLAAGAAVAAPACYAPSALKAVPGEEKVQPHTSSGNTLAERLLPPVRPVAGALAGSIRRVNLPAGVK
MVALTFDLCEASSEVSGYDGALVDYLRDQNVQATFFAGGKWAVSHPERASQIIADPLFEVGNHTWSHANMTVTTGTTMQR
QVDDADMAIAARRAGAQAAGCNVADVPERTTLFRFPYGSCSADSMAYVNETGHLAIQWDVDSGDPAFLGAKFMAEAMLKA
IKPGSIVLMHANGRGKHTAEALRILIPALKAKGYQFATVSQLIAAGTPVIAATCYSERPGDTKVYDDAARAGRRILPTQ

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33648; Mature: 33517

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLSSSLLLALPLCLAAGAAVAAPACYAPSALKAVPGEEKVQPHTSSGNTLAERLLPPV
CCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC
RPVAGALAGSIRRVNLPAGVKMVALTFDLCEASSEVSGYDGALVDYLRDQNVQATFFAGG
HHHHHHHHCCEEEEECCCCCEEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEECC
KWAVSHPERASQIIADPLFEVGNHTWSHANMTVTTGTTMQRQVDDADMAIAARRAGAQAA
EEEECCCHHHHHHHHHHHHHHCCCEECCCEEEEEECCCHHHHCCCHHHHHHHHHCCCCCC
GCNVADVPERTTLFRFPYGSCSADSMAYVNETGHLAIQWDVDSGDPAFLGAKFMAEAMLK
CCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHH
AIKPGSIVLMHANGRGKHTAEALRILIPALKAKGYQFATVSQLIAAGTPVIAATCYSERP
HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCC
GDTKVYDDAARAGRRILPTQ
CCCCEECHHHHCCCCCCCCC
>Mature Secondary Structure 
PRLSSSLLLALPLCLAAGAAVAAPACYAPSALKAVPGEEKVQPHTSSGNTLAERLLPPV
CCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC
RPVAGALAGSIRRVNLPAGVKMVALTFDLCEASSEVSGYDGALVDYLRDQNVQATFFAGG
HHHHHHHHCCEEEEECCCCCEEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEECC
KWAVSHPERASQIIADPLFEVGNHTWSHANMTVTTGTTMQRQVDDADMAIAARRAGAQAA
EEEECCCHHHHHHHHHHHHHHCCCEECCCEEEEEECCCHHHHCCCHHHHHHHHHCCCCCC
GCNVADVPERTTLFRFPYGSCSADSMAYVNETGHLAIQWDVDSGDPAFLGAKFMAEAMLK
CCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHH
AIKPGSIVLMHANGRGKHTAEALRILIPALKAKGYQFATVSQLIAAGTPVIAATCYSERP
HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCC
GDTKVYDDAARAGRRILPTQ
CCCCEECHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]