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The map label for this gene is rgpF [H]

Identifier: 158422520

GI number: 158422520

Start: 1003472

End: 1005457

Strand: Direct

Name: rgpF [H]

Synonym: AZC_0896

Alternate gene names: 158422520

Gene position: 1003472-1005457 (Clockwise)

Preceding gene: 158422519

Following gene: 158422521

Centisome position: 18.69

GC content: 70.9

Gene sequence:

>1986_bases
TTGTCATCCCGCCGCCGATCCGGCAAGGACGGGCTGGACAGTCCGACGGGTGCCATGGCCTTACGAGATTTCATCCGGCG
CCTGCGATACGGCGCCAGCGATGCCTGTTTCGCGCTCTTTCCCTTTGTCGTCGAGCGCAAGCGCGAAGCCGCTGCCGCCA
AGGAGATGCGCCGCCGCGCCGCGGGCAAGCGCGATCCCGCCTGGCGCCCGCCGGCCCCCCCGGTCGTTCCGCCCAAGGCC
GATGGCCTGGGGATCGTTGCTTTCTACAGCGACCTGCCGTCCGACACCGCCGCCCGCATCGAAGCGGCGCGTCCGCAGTT
CGTCCGCCATGTCCAGCCGGTTCTGCCGCTTCTTCCCCTGTCGGCCTCGGTCGAGGAGGAGGTGGCGCTCGCCACGGCCC
ATGGCATCGATACCTTCTGCTTCTGGTTGCGTGCCGATGGAGAACTCCCCGCAGCGCTCCGGGCGATCCTTGCCACACCG
GACCTGGCCATCGGCATCGCAATCTTCTTCGAGGGGCCGCTGCCGGCCGTGCGGGCCGATGTGCTCGATGCCCTCGCCGA
CCCGCGCGCGCTCCGGATCGACGGCCGCCCGATGCTGGGCGCTTCCGGCGGGGGGGGCGACCAGTGGCAGGCGGCGGCTG
CCGCGCGGCTCGGTGGACCGCTGTTTCTGGTGGAGCCCTTTGCCGCGAACGCAGATCTCAGCGCCGGCTTCTCCGCTGCC
GTGCAAATCCCGCCGCGCGATCTGGCTCCGCTTCCGACGCCCCGCCGCATCGAGAGCGTATCGCGGGCCTTCGTCGGCCC
GGTGGACGAATTCATGTTCGTCGCGGACCTCGCCCAGCATCGGGCGCGGCAGGCGACGGTGCCGCTCTTTCCCGGCATCT
GCGCTGGGCATGACAGCACGCCCGGGCAAGGCGCCGACGCCCGCATCATGGTCTCGCCCGACCTTGGTGACGATTATGCC
CGGTGGCTGACCGAGGTGCTCGCCATCGCCCGGGCCCGGCCGGTGGCCGGCGCCAGCCTGGTGTTCATCAATGCCTGGAA
CGACTGGCTGAATGGATCGCATCTCTTGCCAGATGCGCGCTATGGCCATGCGCTGCTGCGCGCCACCGCGAGCACGTGCG
CGCCCTATGCCGGCGCTATCGGCGCGCGCCGTCCGGCGGCGGCCCCCGTCACGCCGCGCCCCGTGCGGACCGGCTCACTG
GCAAGCGTCGTCCATGGCTATTACGAGGACCTGCTGCCGGGCCTGATTGCCGGGCTCGATCCCGCCCATCTCTTCGTCAC
CACGCCGCCCGAGAAGGCCGAGGCGGTGCGTGCGGTGCTGGCCCGCGCGGCCCCCGCTGCCCGGCTGCGGGTGGTCGAAA
ACCGGGGGCGGGACGTGCGCCCCTTCCTCAGCCTGCTGCCGGAACTGGAGGCCGAGGGCTACGATCTCGTGTTGAAGGTG
CACACCAAGCGCAGCCCGCATCAGGGCAAGGAGGGCAGCGACTGGTTGCAGCGCCTCTCCGGGCCGCTGCTGAAGCTCGC
GCGCTCCGAGCGGCTGGCGCCGGTGTTTGAGGCCCATCCGCAGATGGGCCTGCTGGGTGCCGCAGGCCATGTGCTGGACG
GCGCGCTTTATGCGGGCAGCGCAGGGAATGCGGCCTGGATGCGGCGCCTTGCGGCAGAGCTGGGCACCGGAGCGCCGCTC
ACCTCGCCTTATGTGGCCGGCACCATGTTCGTCGCCCGGCTGGGGATCTTCGCCCCGCTTCGGGGGGCGTCGGAACTGCT
GGACCTCTTCGATACGGACATGGGCCTCAAGGATGGCACGCTGGCCCATGCCTTCGAACGCTTCTTCGGTGTGCTGGCTG
CGGAGGCCGGCCTGAGCGTGGGCGAGGTGGCGGCGGACGGGCACGTCGAGCCCGTGGCCGAGGTGGTGAATGGCAGCTAT
GCCTTCGCCCGCTCAACCACCGAAGAGGAGCTTGACCGCTTGCGGCGTCTGGGCGCGGCGCGCTAG

Upstream 100 bases:

>100_bases
CGAGCGGCCGCGCGTCGCCTCCCGCCGCAAGCCCAAGCCGGACACCTCCAGCGCCGTGACGTTGGAAAGCTCCGCGGAGT
AACCTCGCACCGCAGCGGGC

Downstream 100 bases:

>100_bases
AGGCTGAAGGCGCACTTCAACCGGTCCAGCGTCCCGCCTCCGGGCGGCGCGCGCCCATGACCGAGCCCTCTGTCCGTTTC
CGCCATCGAGGACCCCGCAT

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 661; Mature: 660

Protein sequence:

>661_residues
MSSRRRSGKDGLDSPTGAMALRDFIRRLRYGASDACFALFPFVVERKREAAAAKEMRRRAAGKRDPAWRPPAPPVVPPKA
DGLGIVAFYSDLPSDTAARIEAARPQFVRHVQPVLPLLPLSASVEEEVALATAHGIDTFCFWLRADGELPAALRAILATP
DLAIGIAIFFEGPLPAVRADVLDALADPRALRIDGRPMLGASGGGGDQWQAAAAARLGGPLFLVEPFAANADLSAGFSAA
VQIPPRDLAPLPTPRRIESVSRAFVGPVDEFMFVADLAQHRARQATVPLFPGICAGHDSTPGQGADARIMVSPDLGDDYA
RWLTEVLAIARARPVAGASLVFINAWNDWLNGSHLLPDARYGHALLRATASTCAPYAGAIGARRPAAAPVTPRPVRTGSL
ASVVHGYYEDLLPGLIAGLDPAHLFVTTPPEKAEAVRAVLARAAPAARLRVVENRGRDVRPFLSLLPELEAEGYDLVLKV
HTKRSPHQGKEGSDWLQRLSGPLLKLARSERLAPVFEAHPQMGLLGAAGHVLDGALYAGSAGNAAWMRRLAAELGTGAPL
TSPYVAGTMFVARLGIFAPLRGASELLDLFDTDMGLKDGTLAHAFERFFGVLAAEAGLSVGEVAADGHVEPVAEVVNGSY
AFARSTTEEELDRLRRLGAAR

Sequences:

>Translated_661_residues
MSSRRRSGKDGLDSPTGAMALRDFIRRLRYGASDACFALFPFVVERKREAAAAKEMRRRAAGKRDPAWRPPAPPVVPPKA
DGLGIVAFYSDLPSDTAARIEAARPQFVRHVQPVLPLLPLSASVEEEVALATAHGIDTFCFWLRADGELPAALRAILATP
DLAIGIAIFFEGPLPAVRADVLDALADPRALRIDGRPMLGASGGGGDQWQAAAAARLGGPLFLVEPFAANADLSAGFSAA
VQIPPRDLAPLPTPRRIESVSRAFVGPVDEFMFVADLAQHRARQATVPLFPGICAGHDSTPGQGADARIMVSPDLGDDYA
RWLTEVLAIARARPVAGASLVFINAWNDWLNGSHLLPDARYGHALLRATASTCAPYAGAIGARRPAAAPVTPRPVRTGSL
ASVVHGYYEDLLPGLIAGLDPAHLFVTTPPEKAEAVRAVLARAAPAARLRVVENRGRDVRPFLSLLPELEAEGYDLVLKV
HTKRSPHQGKEGSDWLQRLSGPLLKLARSERLAPVFEAHPQMGLLGAAGHVLDGALYAGSAGNAAWMRRLAAELGTGAPL
TSPYVAGTMFVARLGIFAPLRGASELLDLFDTDMGLKDGTLAHAFERFFGVLAAEAGLSVGEVAADGHVEPVAEVVNGSY
AFARSTTEEELDRLRRLGAAR
>Mature_660_residues
SSRRRSGKDGLDSPTGAMALRDFIRRLRYGASDACFALFPFVVERKREAAAAKEMRRRAAGKRDPAWRPPAPPVVPPKAD
GLGIVAFYSDLPSDTAARIEAARPQFVRHVQPVLPLLPLSASVEEEVALATAHGIDTFCFWLRADGELPAALRAILATPD
LAIGIAIFFEGPLPAVRADVLDALADPRALRIDGRPMLGASGGGGDQWQAAAAARLGGPLFLVEPFAANADLSAGFSAAV
QIPPRDLAPLPTPRRIESVSRAFVGPVDEFMFVADLAQHRARQATVPLFPGICAGHDSTPGQGADARIMVSPDLGDDYAR
WLTEVLAIARARPVAGASLVFINAWNDWLNGSHLLPDARYGHALLRATASTCAPYAGAIGARRPAAAPVTPRPVRTGSLA
SVVHGYYEDLLPGLIAGLDPAHLFVTTPPEKAEAVRAVLARAAPAARLRVVENRGRDVRPFLSLLPELEAEGYDLVLKVH
TKRSPHQGKEGSDWLQRLSGPLLKLARSERLAPVFEAHPQMGLLGAAGHVLDGALYAGSAGNAAWMRRLAAELGTGAPLT
SPYVAGTMFVARLGIFAPLRGASELLDLFDTDMGLKDGTLAHAFERFFGVLAAEAGLSVGEVAADGHVEPVAEVVNGSYA
FARSTTEEELDRLRRLGAAR

Specific function: Unknown

COG id: COG3754

COG function: function code M; Lipopolysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007739 [H]

Pfam domain/function: PF05045 RgpF [H]

EC number: NA

Molecular weight: Translated: 70170; Mature: 70039

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRRRSGKDGLDSPTGAMALRDFIRRLRYGASDACFALFPFVVERKREAAAAKEMRRRA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGKRDPAWRPPAPPVVPPKADGLGIVAFYSDLPSDTAARIEAARPQFVRHVQPVLPLLPL
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC
SASVEEEVALATAHGIDTFCFWLRADGELPAALRAILATPDLAIGIAIFFEGPLPAVRAD
CCCHHHHHHHHHHCCCHHEEEEEECCCCCHHHHHHHHCCCCHHEEEEEEECCCCHHHHHH
VLDALADPRALRIDGRPMLGASGGGGDQWQAAAAARLGGPLFLVEPFAANADLSAGFSAA
HHHHHCCCCEEEECCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEE
VQIPPRDLAPLPTPRRIESVSRAFVGPVDEFMFVADLAQHRARQATVPLFPGICAGHDST
EECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PGQGADARIMVSPDLGDDYARWLTEVLAIARARPVAGASLVFINAWNDWLNGSHLLPDAR
CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCCCCCH
YGHALLRATASTCAPYAGAIGARRPAAAPVTPRPVRTGSLASVVHGYYEDLLPGLIAGLD
HHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PAHLFVTTPPEKAEAVRAVLARAAPAARLRVVENRGRDVRPFLSLLPELEAEGYDLVLKV
CCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEE
HTKRSPHQGKEGSDWLQRLSGPLLKLARSERLAPVFEAHPQMGLLGAAGHVLDGALYAGS
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCHHCCCC
AGNAAWMRRLAAELGTGAPLTSPYVAGTMFVARLGIFAPLRGASELLDLFDTDMGLKDGT
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCH
LAHAFERFFGVLAAEAGLSVGEVAADGHVEPVAEVVNGSYAFARSTTEEELDRLRRLGAA
HHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCC
R
C
>Mature Secondary Structure 
SSRRRSGKDGLDSPTGAMALRDFIRRLRYGASDACFALFPFVVERKREAAAAKEMRRRA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGKRDPAWRPPAPPVVPPKADGLGIVAFYSDLPSDTAARIEAARPQFVRHVQPVLPLLPL
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC
SASVEEEVALATAHGIDTFCFWLRADGELPAALRAILATPDLAIGIAIFFEGPLPAVRAD
CCCHHHHHHHHHHCCCHHEEEEEECCCCCHHHHHHHHCCCCHHEEEEEEECCCCHHHHHH
VLDALADPRALRIDGRPMLGASGGGGDQWQAAAAARLGGPLFLVEPFAANADLSAGFSAA
HHHHHCCCCEEEECCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEE
VQIPPRDLAPLPTPRRIESVSRAFVGPVDEFMFVADLAQHRARQATVPLFPGICAGHDST
EECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PGQGADARIMVSPDLGDDYARWLTEVLAIARARPVAGASLVFINAWNDWLNGSHLLPDAR
CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCCCCCH
YGHALLRATASTCAPYAGAIGARRPAAAPVTPRPVRTGSLASVVHGYYEDLLPGLIAGLD
HHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PAHLFVTTPPEKAEAVRAVLARAAPAARLRVVENRGRDVRPFLSLLPELEAEGYDLVLKV
CCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEE
HTKRSPHQGKEGSDWLQRLSGPLLKLARSERLAPVFEAHPQMGLLGAAGHVLDGALYAGS
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCHHCCCC
AGNAAWMRRLAAELGTGAPLTSPYVAGTMFVARLGIFAPLRGASELLDLFDTDMGLKDGT
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCH
LAHAFERFFGVLAAEAGLSVGEVAADGHVEPVAEVVNGSYAFARSTTEEELDRLRRLGAA
HHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]