| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is gsiB [H]
Identifier: 158422400
GI number: 158422400
Start: 877465
End: 878979
Strand: Reverse
Name: gsiB [H]
Synonym: AZC_0776
Alternate gene names: 158422400
Gene position: 878979-877465 (Counterclockwise)
Preceding gene: 158422401
Following gene: 158422399
Centisome position: 16.37
GC content: 63.89
Gene sequence:
>1515_bases ATGTGGAAGCAGTTTTTTGCGGCCCTCACCATCGTGGGAGGGCTCACGGGAGCCGTTGGTGCCGGCGCGCAGGCCCAGAC GCTGCGCTTCGGCCTGATGGATGATCCGGACGCGCTCGATCCGACCCTGTCCCGCAACTACACGACGCGGATGGTCTTCG CTGCCCTCTGCGACAAGCTCGTGGACATTGACGCCAAGCTCAACATCATACCGCAACTGGCGAGCGAATGGTCCTGGTCC GCCGACCAGAAGACCCTGACCATGAAGATCCGTCCCGGCCTCACCTTCCATGACGGCGAGAAGCTCGACGCCGAAGCGGT GAAGTTCAATCTCGAACGTCACCAGAAGATGCCCGGCAGCCAGCGCCGCTCCGAGCTTGCCGCGCTCGACACGGTGGAAG TGGTGGACCCGGTGACGGTGCGCCTGCATCTCAAGGCGCCTTCGGCCCCCTTCCTCTCTCAGCTCACCGACCGCGCGGGC ATGATGGTCTCCCCCAAGGCGGCACAGGCGCTGGGCGACAAGTTCGCCACCGCGCCGGTCTGCGCCGGGCCGTTCAAGTT CGTCGAGCGGGTGGCGCAGGACCATATCCTGCTGGAGAAGTTCGACGGCTACTGGAACAAGGACAACATCTTCCTCCAGA AGGTGGATTTCCGCACCATTCCGGACAGCACGGTCCGCCTCACCAACCTGCGCTCGGGTCAGCTCGATCTGCTGGAGCGC CTCGCCCCGACCGACCTGCCGGAAGTGCGCTCCCAGGGCAAGCTGAAGGTGGGAACGGGGTATGAGCTCGGCTTCCAGTC CATCATCTTCAACACCGCCAAGGCGGATTCGGTGATCGGTGGTGACGCCCGCGTGCGCAAGGCGTTCGAGCTTTCCATCG ACCGCGAGGCCCTGAGCCAGGTGGTCTTCAACGGCGAATATCTGCCGGGCAACCAGTGGGTGAGCCCGAAGAACCCCTTC TATGTCTCGGCCTTCCCCATCCCGAAGCGCGACGTGGCCAAGGCCAAGGCGCTGCTGAAGGACGCGGGCGTCAAGACACC GGTGCCCGTGAACCTCATCGTCTATTCCACCAATGAGGCCGCGCAGGTGGGACAAGTGGTGCAGGCCATGACGAAAGAGT CAGGCTTTGAGGTGAAGCTCGTGACCACTGACATTGGCACTGCGCTCAATGCCGCCGACCAGGGCAACTTCGAAGCCTTC CTCTATGCCTGGAGCGGCCGGCCCGATCCGGACGGCAACACCTACAACTTCCTCGCCTGCAAGGCGCCGCTGAACTACAC GCGCTTCTGCAACGAGAAAGCGCAGGCCGCGCTGGATGCCGAGCGCGCCACCAGCGATCCGGCGGCGCGGGCGGCAGCCT GGAAGAATCTCGCGGAAGTGGTGCTGACCGAAGACCCGCTCATCTATCTCTATCACCGCAAGCTCATGTGGGCCTACACG CCCAAGCTGAAGGGCTTCACCGAGGCTGACTATCCCGATGGCCTCGTGCGCTTCACCGGCCTGAAACTCGACTGA
Upstream 100 bases:
>100_bases ACGGGACTCAAGCTGAACTGACCGTGACCGCCCCCGCCCGACGCCGGCGGGGGCGCCGCTGCTGATCCTGAAATAAAATA GAACCTCCAGAGGACAGGCC
Downstream 100 bases:
>100_bases CGGGATCGACCCCGCACAATGTTGCGCTTCTTCCTGAAACGGCTGGCCACGATCATCCCCACGGTGATCCTGGCCTCCAT GATCATCTTCGCCCTGCAGC
Product: ABC transporter substrate-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 504; Mature: 504
Protein sequence:
>504_residues MWKQFFAALTIVGGLTGAVGAGAQAQTLRFGLMDDPDALDPTLSRNYTTRMVFAALCDKLVDIDAKLNIIPQLASEWSWS ADQKTLTMKIRPGLTFHDGEKLDAEAVKFNLERHQKMPGSQRRSELAALDTVEVVDPVTVRLHLKAPSAPFLSQLTDRAG MMVSPKAAQALGDKFATAPVCAGPFKFVERVAQDHILLEKFDGYWNKDNIFLQKVDFRTIPDSTVRLTNLRSGQLDLLER LAPTDLPEVRSQGKLKVGTGYELGFQSIIFNTAKADSVIGGDARVRKAFELSIDREALSQVVFNGEYLPGNQWVSPKNPF YVSAFPIPKRDVAKAKALLKDAGVKTPVPVNLIVYSTNEAAQVGQVVQAMTKESGFEVKLVTTDIGTALNAADQGNFEAF LYAWSGRPDPDGNTYNFLACKAPLNYTRFCNEKAQAALDAERATSDPAARAAAWKNLAEVVLTEDPLIYLYHRKLMWAYT PKLKGFTEADYPDGLVRFTGLKLD
Sequences:
>Translated_504_residues MWKQFFAALTIVGGLTGAVGAGAQAQTLRFGLMDDPDALDPTLSRNYTTRMVFAALCDKLVDIDAKLNIIPQLASEWSWS ADQKTLTMKIRPGLTFHDGEKLDAEAVKFNLERHQKMPGSQRRSELAALDTVEVVDPVTVRLHLKAPSAPFLSQLTDRAG MMVSPKAAQALGDKFATAPVCAGPFKFVERVAQDHILLEKFDGYWNKDNIFLQKVDFRTIPDSTVRLTNLRSGQLDLLER LAPTDLPEVRSQGKLKVGTGYELGFQSIIFNTAKADSVIGGDARVRKAFELSIDREALSQVVFNGEYLPGNQWVSPKNPF YVSAFPIPKRDVAKAKALLKDAGVKTPVPVNLIVYSTNEAAQVGQVVQAMTKESGFEVKLVTTDIGTALNAADQGNFEAF LYAWSGRPDPDGNTYNFLACKAPLNYTRFCNEKAQAALDAERATSDPAARAAAWKNLAEVVLTEDPLIYLYHRKLMWAYT PKLKGFTEADYPDGLVRFTGLKLD >Mature_504_residues MWKQFFAALTIVGGLTGAVGAGAQAQTLRFGLMDDPDALDPTLSRNYTTRMVFAALCDKLVDIDAKLNIIPQLASEWSWS ADQKTLTMKIRPGLTFHDGEKLDAEAVKFNLERHQKMPGSQRRSELAALDTVEVVDPVTVRLHLKAPSAPFLSQLTDRAG MMVSPKAAQALGDKFATAPVCAGPFKFVERVAQDHILLEKFDGYWNKDNIFLQKVDFRTIPDSTVRLTNLRSGQLDLLER LAPTDLPEVRSQGKLKVGTGYELGFQSIIFNTAKADSVIGGDARVRKAFELSIDREALSQVVFNGEYLPGNQWVSPKNPF YVSAFPIPKRDVAKAKALLKDAGVKTPVPVNLIVYSTNEAAQVGQVVQAMTKESGFEVKLVTTDIGTALNAADQGNFEAF LYAWSGRPDPDGNTYNFLACKAPLNYTRFCNEKAQAALDAERATSDPAARAAAWKNLAEVVLTEDPLIYLYHRKLMWAYT PKLKGFTEADYPDGLVRFTGLKLD
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1789966, Length=506, Percent_Identity=25.6916996047431, Blast_Score=152, Evalue=6e-38, Organism=Escherichia coli, GI1787052, Length=460, Percent_Identity=26.0869565217391, Blast_Score=138, Evalue=8e-34, Organism=Escherichia coli, GI87081878, Length=497, Percent_Identity=23.943661971831, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI1789887, Length=484, Percent_Identity=24.1735537190083, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1789397, Length=497, Percent_Identity=23.7424547283702, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1787762, Length=488, Percent_Identity=24.1803278688525, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787495, Length=524, Percent_Identity=22.5190839694656, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1787551, Length=499, Percent_Identity=24.0480961923848, Blast_Score=82, Evalue=6e-17,
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 55519; Mature: 55519
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKQFFAALTIVGGLTGAVGAGAQAQTLRFGLMDDPDALDPTLSRNYTTRMVFAALCDKL CHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH VDIDAKLNIIPQLASEWSWSADQKTLTMKIRPGLTFHDGEKLDAEAVKFNLERHQKMPGS HCCCCCEEHHHHHHHCCCCCCCCEEEEEEECCCCEECCCCCCCHHHHHEEHHHHHCCCCH QRRSELAALDTVEVVDPVTVRLHLKAPSAPFLSQLTDRAGMMVSPKAAQALGDKFATAPV HHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCEECCHHHHHHHHHHCCCCC CAGPFKFVERVAQDHILLEKFDGYWNKDNIFLQKVDFRTIPDSTVRLTNLRSGQLDLLER CCCHHHHHHHHHHHHEEEEHHCCCCCCCCEEEEEECCEECCCCCEEEECCCCCHHHHHHH LAPTDLPEVRSQGKLKVGTGYELGFQSIIFNTAKADSVIGGDARVRKAFELSIDREALSQ CCCCCCHHHHCCCCEEECCCCHHCHHHHHEECCCCCCEECCCHHHHHHHHEECCHHHHHH VVFNGEYLPGNQWVSPKNPFYVSAFPIPKRDVAKAKALLKDAGVKTPVPVNLIVYSTNEA HHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH AQVGQVVQAMTKESGFEVKLVTTDIGTALNAADQGNFEAFLYAWSGRPDPDGNTYNFLAC HHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEE KAPLNYTRFCNEKAQAALDAERATSDPAARAAAWKNLAEVVLTEDPLIYLYHRKLMWAYT ECCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCCEEEEEEHHHHEEEC PKLKGFTEADYPDGLVRFTGLKLD CCCCCCCCCCCCCCEEEEECEECC >Mature Secondary Structure MWKQFFAALTIVGGLTGAVGAGAQAQTLRFGLMDDPDALDPTLSRNYTTRMVFAALCDKL CHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH VDIDAKLNIIPQLASEWSWSADQKTLTMKIRPGLTFHDGEKLDAEAVKFNLERHQKMPGS HCCCCCEEHHHHHHHCCCCCCCCEEEEEEECCCCEECCCCCCCHHHHHEEHHHHHCCCCH QRRSELAALDTVEVVDPVTVRLHLKAPSAPFLSQLTDRAGMMVSPKAAQALGDKFATAPV HHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCEECCHHHHHHHHHHCCCCC CAGPFKFVERVAQDHILLEKFDGYWNKDNIFLQKVDFRTIPDSTVRLTNLRSGQLDLLER CCCHHHHHHHHHHHHEEEEHHCCCCCCCCEEEEEECCEECCCCCEEEECCCCCHHHHHHH LAPTDLPEVRSQGKLKVGTGYELGFQSIIFNTAKADSVIGGDARVRKAFELSIDREALSQ CCCCCCHHHHCCCCEEECCCCHHCHHHHHEECCCCCCEECCCHHHHHHHHEECCHHHHHH VVFNGEYLPGNQWVSPKNPFYVSAFPIPKRDVAKAKALLKDAGVKTPVPVNLIVYSTNEA HHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH AQVGQVVQAMTKESGFEVKLVTTDIGTALNAADQGNFEAFLYAWSGRPDPDGNTYNFLAC HHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEE KAPLNYTRFCNEKAQAALDAERATSDPAARAAAWKNLAEVVLTEDPLIYLYHRKLMWAYT ECCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCCEEEEEEHHHHEEEC PKLKGFTEADYPDGLVRFTGLKLD CCCCCCCCCCCCCCEEEEECEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA