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The map label for this gene is fliR [H]

Identifier: 158422279

GI number: 158422279

Start: 725937

End: 726686

Strand: Direct

Name: fliR [H]

Synonym: AZC_0655

Alternate gene names: 158422279

Gene position: 725937-726686 (Clockwise)

Preceding gene: 158422278

Following gene: 158422280

Centisome position: 13.52

GC content: 62.13

Gene sequence:

>750_bases
GTGATCCCTCTGGACGTCTCGATCCTGAGCGCCTTCCTGGTGTTCTGCAGGATCGGGAGCTGCATCATGATGATGCCGGG
CCTGTCGGGCTATCGCCTGCCCGTGCGCGTCCGCCTGCTGCTGGCGGTGGCGGTCTCTCTCGCCATCCTGCCACTGATGT
ATGACGACCTCGTCAATTTCATCCGCAACGCCAATTCCGCGCAGCTTCTGCTGTCCATCGGCACCGAGATGGCGACGGGG
GCCATCATCGGAACCCTGGCCCGCATCTTCTATCTCATGCTGCAGATGATGCTGGTGGCCATCGCCCAGTTCATCGGCCT
GTCCTCCCCCATGGGCCTGCCGGAAGACGGCGAGGTGCTGCCATCGCTGGCCACGCTGATGATCCTGGCGGCCACCACGA
TGATGTTCCTGACCGACCAGCATTACGAGATGCTGCGGGGCCTCATCGCTTCCTATCGGCAGATCCCGGTGGGGGTGGGC
TTTGGCGGCCGGGGCGCCCTCATCCAGGCCTCGGACCAGCTTTCTGCGGCGCTGATGATCGCCATGCGCCTCGCCAGCCC
GTTCCTGATCTACTCGCTCATCATCAATTTCGCGGTCGGCCTCATCAACAAGCTGGTGCCGCAGATCCCGGTTTACTTCA
TTTCTGCCCCGTTCATTCTGCTCGGGGGCCTCATTTTGCTTTACGGTCTCTCGGATCAGATGTTGACCGCCTTCTCCGCC
GCGTTCAATCTCTTCCTGAGGACGGGGTGA

Upstream 100 bases:

>100_bases
ACGTGCGCATGATCATCGAGCGCATGTTCCCCTCGCTGCCCGTGCTCTCGCACGTGGAGATCGCCCGCGGCGTCGAGATC
AAGTCCCTCGGGACCATCTC

Downstream 100 bases:

>100_bases
GGCATGAAGCAGCGTCTGCGCAAGGCGGGCCGGATCGTCGCCGTTCAGGAACAGATGCACCGCCAGGCGGAATGGCGGAT
GGCCGATATTTCACGCGCCA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MIPLDVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNFIRNANSAQLLLSIGTEMATG
AIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGLPEDGEVLPSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVG
FGGRGALIQASDQLSAALMIAMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFSA
AFNLFLRTG

Sequences:

>Translated_249_residues
MIPLDVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNFIRNANSAQLLLSIGTEMATG
AIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGLPEDGEVLPSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVG
FGGRGALIQASDQLSAALMIAMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFSA
AFNLFLRTG
>Mature_249_residues
MIPLDVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNFIRNANSAQLLLSIGTEMATG
AIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGLPEDGEVLPSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVG
FGGRGALIQASDQLSAALMIAMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFSA
AFNLFLRTG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 26905; Mature: 26905

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLDVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNF
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNANSAQLLLSIGTEMATGAIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGLPEDGEVL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
PSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVGFGGRGALIQASDQLSAALMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHH
AMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AFNLFLRTG
HHHHHHCCC
>Mature Secondary Structure
MIPLDVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNF
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNANSAQLLLSIGTEMATGAIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGLPEDGEVL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
PSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVGFGGRGALIQASDQLSAALMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHH
AMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AFNLFLRTG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]