Click here to switch to the map view.

The map label for this gene is fliF [H]

Identifier: 158422251

GI number: 158422251

Start: 701371

End: 703050

Strand: Reverse

Name: fliF [H]

Synonym: AZC_0627

Alternate gene names: 158422251

Gene position: 703050-701371 (Counterclockwise)

Preceding gene: 158422252

Following gene: 158422250

Centisome position: 13.09

GC content: 67.86

Gene sequence:

>1680_bases
ATGAATGCCCGCGAGCAGCTTGAGCGGCTCCTTTCGAACCTCCGTCAGCTCGGCGCCCGGCGCCTCGTGGCGCTCGGCCT
GATCGCCTTCACCGTGATGGCGGTGATCGGCCTCGGCGCCATGTATCTGAGCCAGCCGGAACGCGAGACGCTGTACGCCA
ACCTGAGCCGTGACGACGTCACGCGCATCGGCGGCGCGCTCAAGGATGCCGGCATTCCCTTCGATGTGAGCTCGGACGGC
GCCACCGTTCTCGTGGCCCATTCCGACACGGCCCGCGCCCGCATGCTGCTGGCGGTCAAGGGCCTGCCGCAGAGCTCCAG
CTCCGGCTACGAACTCTTCAACGACGTGCGCTCCTTCGGCCTCACCTCCTTCATGCAGGAAGTGACCAAGGTCCGCGCGC
TCGAGGGCGAAATCGCCCGCACCATCCAGACCATGAAGGGCATCAAGGCGGCCCGCGTCCACATCGTGCTGCCCGACCGC
GGCTCCTTCCGCCGCGACCAGCAGCTCGCCACCGCCTCCGTGGTCATCCGCACCGAGAATTCCGCCGACAGCTCCACCGC
CCAGGCGATCCGCCACCTCGTGGCCGCCGCCATTCCGGGCATGAAGCTCGACAACGTCACCGTGCTGAATACCGAGGGCA
CGATCCTCACCTCCACCGAGGACGGCGTCACCGCCGCCGCGACGCGCAAGTCCGCGCTCCAGCAGCAGGTGAACCGCGAG
ACGGAAGAGAAGATCCGCCGCACCCTCACCCCCTTCCTCGGCCTCGGCAATTTCGAGGTCAGCGTGTCCTCGCGCCTGAA
CACCGACCGCAGCACCATCAATGAGACCACCTACGACCCGGCGTCGAAGGCGGAGCGCTCCACGCGCGTGGTGAAGGAGC
AGGGCCAGACGCAGAACCGCTCGCAGCAACCCAACACCACGGTGCAGCAGAACATCCCCCCGCCTCCCGGCACCCCGGGC
ACGGGCACGGAGAACAACGAGAACAACCAGCGCCGCGAAGAGCTCACCAATTTCGAGATCTCCACGCGCCAGAGCCAGAC
GGTCCGCGATGCCTACAGCGTCGAGAACCTGTCCATCGCCGTGCTCGTGAACAAGGAGCGCCTCACCGGCACGAAGGACG
GCACCCCGCTGGAGACCCAGACCTACGAGATCGAGCAGCTCGTCTCCTCGGCGGCCGGCTTCGACAAGGAGCGTGGCGAC
AAGCTGAAGGTCGTGGCCGTGCCCTTCGCCGACGGCGGCAACAACATGGAGCCGATCCCGCCGCTCACCTGGTCCGAGCT
GCTGTTCCGTCAGGCCGGCACCATCGTGAATGCCGTGACCATCCTGGTCGTCGCCATCCTGCTCATCTGGTTCGGCCTGC
GCCCGGCGCTGCGTGCCATCCTGGCCCGGCCCGAGCCCGACGAGGCGGAAGCCATTGAGGCGGCGATGCTCGCCGCCCCG
ACCGAACTGCCGCCGGATACGGTGCTGCCGTCCACGGCCCAGAACCCGAACACGCTCGACGGCGTCACCACGCTGGCCGG
CTTCACCGGCGGCGACTCGGGCCCGGTCAACCTGATCGGCGACGTCACCTCCAAGGTGAACCGTTCGCCCCAGCGCCGGC
TCGAGCAGATGATCGAGTATGACGAGGAGCAGGCCGCTGCGATCCTGCGTCAGTGGCTGCATCAGGAGGCCAAGGCGTGA

Upstream 100 bases:

>100_bases
AGAGCAGAGGCAGGTTCAGGCCGATCTTTGCTCCGTCCGTCCGGGACACCGGCCCCAGCCAAAGTCCCAAGTCGAATGCA
ATCACGATGAGGCGGCGCGC

Downstream 100 bases:

>100_bases
GCGCGAAGGTCCTGAGACACCACCTGCCGCTCTTCTCCGGCACCGACGCGCCCCTCCCGGCGGAACTCGCCGAGGCGCGC
AAGCCCGGCGTCCCGAGCCG

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDVTRIGGALKDAGIPFDVSSDG
ATVLVAHSDTARARMLLAVKGLPQSSSSGYELFNDVRSFGLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDR
GSFRRDQQLATASVVIRTENSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNRE
TEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQNRSQQPNTTVQQNIPPPPGTPG
TGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSIAVLVNKERLTGTKDGTPLETQTYEIEQLVSSAAGFDKERGD
KLKVVAVPFADGGNNMEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAAMLAAP
TELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLEQMIEYDEEQAAAILRQWLHQEAKA

Sequences:

>Translated_559_residues
MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDVTRIGGALKDAGIPFDVSSDG
ATVLVAHSDTARARMLLAVKGLPQSSSSGYELFNDVRSFGLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDR
GSFRRDQQLATASVVIRTENSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNRE
TEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQNRSQQPNTTVQQNIPPPPGTPG
TGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSIAVLVNKERLTGTKDGTPLETQTYEIEQLVSSAAGFDKERGD
KLKVVAVPFADGGNNMEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAAMLAAP
TELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLEQMIEYDEEQAAAILRQWLHQEAKA
>Mature_559_residues
MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDVTRIGGALKDAGIPFDVSSDG
ATVLVAHSDTARARMLLAVKGLPQSSSSGYELFNDVRSFGLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDR
GSFRRDQQLATASVVIRTENSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNRE
TEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQNRSQQPNTTVQQNIPPPPGTPG
TGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSIAVLVNKERLTGTKDGTPLETQTYEIEQLVSSAAGFDKERGD
KLKVVAVPFADGGNNMEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAAMLAAP
TELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLEQMIEYDEEQAAAILRQWLHQEAKA

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=463, Percent_Identity=28.5097192224622, Blast_Score=164, Evalue=1e-41,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 60747; Mature: 60747

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCHHHH
TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSSSGYELFNDVRSFG
HHHCCHHHHCCCCCEECCCCCEEEEEECCCHHHEEEHEEECCCCCCCCHHHHHHHHHHHH
LTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTEN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHEEEEEEEECC
SADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNRE
CCCHHHHHHHHHHHHHHCCCCEECCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCH
TEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQNR
HHHHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
SQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSIA
CCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEE
VLVNKERLTGTKDGTPLETQTYEIEQLVSSAAGFDKERGDKLKVVAVPFADGGNNMEPIP
EEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCC
PLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAAMLAAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCC
TELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLEQMIEY
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCC
DEEQAAAILRQWLHQEAKA
CHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCHHHH
TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSSSGYELFNDVRSFG
HHHCCHHHHCCCCCEECCCCCEEEEEECCCHHHEEEHEEECCCCCCCCHHHHHHHHHHHH
LTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTEN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHEEEEEEEECC
SADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNRE
CCCHHHHHHHHHHHHHHCCCCEECCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCH
TEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQNR
HHHHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
SQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSIA
CCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEE
VLVNKERLTGTKDGTPLETQTYEIEQLVSSAAGFDKERGDKLKVVAVPFADGGNNMEPIP
EEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCC
PLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAAMLAAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCC
TELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLEQMIEY
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCC
DEEQAAAILRQWLHQEAKA
CHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11013709 [H]