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The map label for this gene is ytbD [H]

Identifier: 158421908

GI number: 158421908

Start: 329515

End: 330774

Strand: Direct

Name: ytbD [H]

Synonym: AZC_0284

Alternate gene names: 158421908

Gene position: 329515-330774 (Clockwise)

Preceding gene: 158421902

Following gene: 158421911

Centisome position: 6.14

GC content: 69.68

Gene sequence:

>1260_bases
TTGCTGCAACGCCGCATGCGCTGTCGCGTTGATGCGGGTTTCACCCGTTCTCCGGCCTTCGGCCGGCCCCTCAGGATGTC
CGCCATGCCTGTTGCTCTCTATGCCCTTGCCGCCGGTGCCTTCGGCATCGGCGTCACCGAATTCGTCATCATGGGCCTGC
TGCTCGATGTGGGTGCCGATCTCGGCGTCTCGCTCTCGGCGGCGGGTCTGCTCATTTCCGGCTATGCGCTGGGCGTCGTG
GTCGGCGCGCCGGTGCTCACGATCCTCACCGCCCGCTGGCCGCGCAAGGCGGTGCTGCTCGGCCTGATGGCCGTCTTCAC
CCTCGGCAACCTCGCCTGCGCGCTGGCGCCGGACTACGAACTGCTGATGGCCGCCCGCGTGCTCACCGCCTTCGCCCACG
CCACCTTCTTCGGCGTCGGCTCGGTGGTCGCGACGGGGCTCGTGCCGGCCAACAAGAAGGCTTCGGCCATCGCCATCATG
TTCACGGGTCTCACGGTCGCGAACATCCTCGGCGTGCCGTTCGGCACCTGGCTCGGCCAGCATTATGGCTGGCGCTCCAC
CTTCTGGGCGGTGACGCTGGTGGGCGTGCTGGCCTTCGCGGTCATCGCGCTGCTGGTGCCGGCAAACGCCGCCAAGCCCG
AGGCGAGCAATCTGAAGAAGGATCTCGCGGTGCTCACCCGCGCGCCGCTGCTGCTCGGCCTTCTCACCACGGTGCTGAGC
TGGGTCGGCGTGTTCGCGGCCTTCACCTACATCGCGCCCATGCTGACCAAGATCACCGGCTTTGCGGAGAGCGCGGTGTC
GCCCATCCTCCTGGTGTTCGGCGCCGGTCTCGTGGTGGGCAATCTTGCCGGCGGGCGCCTCGCCGACCGCTGGCTCGTGC
CGACCGTTTACGGTTCGCTGGTGGTGCTCGCCGCGGTGCTGGGCGCGCTCACCTTCGCTCTCCATAACGCCGTTGCGGCG
GTGATCTTCGTCGGCCTGCTCGGCGCGGTGGCCTTCGCGACCGTGGCACCATTGCAGATGTGGGTGCTGGAGAAGGCGCA
GGGCGCCGGCCAGAGCCTCGCGTCCTCCTTCAACATCGCCGCCTTCAATCTCGGCAATGCCATCGGCGCGTGGCTGGGCG
GGGTGGTGATCGATCACGGGCTCGGCCTCGGCGCCGTGCCGTGGGTGGCCGCCCTCGTGCCTCTCGCCGCTGTGCCCGTG
GCCTGGTGGGCCGGGCGGTTGGAGGCCGGTCGCGCGCTCACCCCCGCCGCCGCCGAATAG

Upstream 100 bases:

>100_bases
TCTCCGCCGTGCGGTTGACGTCGAGCCGGGCCATTTGGAAATCACATCACAGATGAATTGAATTTACTGCTTCTAGTTCA
TCCACGCCCGTGCGTCCATT

Downstream 100 bases:

>100_bases
CACGGAGCGCAAAAACAGAAAGCCCGCGCACGGGACACCGAGCGCGGGCTTTCCTTTATGTGGCGGATTGTCCGCGCGTC
AGATCTTCTGGTTGTACTCG

Product: transmembrane efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLQRRMRCRVDAGFTRSPAFGRPLRMSAMPVALYALAAGAFGIGVTEFVIMGLLLDVGADLGVSLSAAGLLISGYALGVV
VGAPVLTILTARWPRKAVLLGLMAVFTLGNLACALAPDYELLMAARVLTAFAHATFFGVGSVVATGLVPANKKASAIAIM
FTGLTVANILGVPFGTWLGQHYGWRSTFWAVTLVGVLAFAVIALLVPANAAKPEASNLKKDLAVLTRAPLLLGLLTTVLS
WVGVFAAFTYIAPMLTKITGFAESAVSPILLVFGAGLVVGNLAGGRLADRWLVPTVYGSLVVLAAVLGALTFALHNAVAA
VIFVGLLGAVAFATVAPLQMWVLEKAQGAGQSLASSFNIAAFNLGNAIGAWLGGVVIDHGLGLGAVPWVAALVPLAAVPV
AWWAGRLEAGRALTPAAAE

Sequences:

>Translated_419_residues
MLQRRMRCRVDAGFTRSPAFGRPLRMSAMPVALYALAAGAFGIGVTEFVIMGLLLDVGADLGVSLSAAGLLISGYALGVV
VGAPVLTILTARWPRKAVLLGLMAVFTLGNLACALAPDYELLMAARVLTAFAHATFFGVGSVVATGLVPANKKASAIAIM
FTGLTVANILGVPFGTWLGQHYGWRSTFWAVTLVGVLAFAVIALLVPANAAKPEASNLKKDLAVLTRAPLLLGLLTTVLS
WVGVFAAFTYIAPMLTKITGFAESAVSPILLVFGAGLVVGNLAGGRLADRWLVPTVYGSLVVLAAVLGALTFALHNAVAA
VIFVGLLGAVAFATVAPLQMWVLEKAQGAGQSLASSFNIAAFNLGNAIGAWLGGVVIDHGLGLGAVPWVAALVPLAAVPV
AWWAGRLEAGRALTPAAAE
>Mature_419_residues
MLQRRMRCRVDAGFTRSPAFGRPLRMSAMPVALYALAAGAFGIGVTEFVIMGLLLDVGADLGVSLSAAGLLISGYALGVV
VGAPVLTILTARWPRKAVLLGLMAVFTLGNLACALAPDYELLMAARVLTAFAHATFFGVGSVVATGLVPANKKASAIAIM
FTGLTVANILGVPFGTWLGQHYGWRSTFWAVTLVGVLAFAVIALLVPANAAKPEASNLKKDLAVLTRAPLLLGLLTTVLS
WVGVFAAFTYIAPMLTKITGFAESAVSPILLVFGAGLVVGNLAGGRLADRWLVPTVYGSLVVLAAVLGALTFALHNAVAA
VIFVGLLGAVAFATVAPLQMWVLEKAQGAGQSLASSFNIAAFNLGNAIGAWLGGVVIDHGLGLGAVPWVAALVPLAAVPV
AWWAGRLEAGRALTPAAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=378, Percent_Identity=47.3544973544974, Blast_Score=268, Evalue=6e-73,
Organism=Escherichia coli, GI1786595, Length=396, Percent_Identity=36.6161616161616, Blast_Score=222, Evalue=3e-59,
Organism=Escherichia coli, GI1787808, Length=229, Percent_Identity=32.3144104803493, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693198, Length=337, Percent_Identity=25.5192878338279, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42961; Mature: 42961

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQRRMRCRVDAGFTRSPAFGRPLRMSAMPVALYALAAGAFGIGVTEFVIMGLLLDVGAD
CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
LGVSLSAAGLLISGYALGVVVGAPVLTILTARWPRKAVLLGLMAVFTLGNLACALAPDYE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
LLMAARVLTAFAHATFFGVGSVVATGLVPANKKASAIAIMFTGLTVANILGVPFGTWLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHH
HYGWRSTFWAVTLVGVLAFAVIALLVPANAAKPEASNLKKDLAVLTRAPLLLGLLTTVLS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WVGVFAAFTYIAPMLTKITGFAESAVSPILLVFGAGLVVGNLAGGRLADRWLVPTVYGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VVLAAVLGALTFALHNAVAAVIFVGLLGAVAFATVAPLQMWVLEKAQGAGQSLASSFNIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEE
AFNLGNAIGAWLGGVVIDHGLGLGAVPWVAALVPLAAVPVAWWAGRLEAGRALTPAAAE
EEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLQRRMRCRVDAGFTRSPAFGRPLRMSAMPVALYALAAGAFGIGVTEFVIMGLLLDVGAD
CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
LGVSLSAAGLLISGYALGVVVGAPVLTILTARWPRKAVLLGLMAVFTLGNLACALAPDYE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
LLMAARVLTAFAHATFFGVGSVVATGLVPANKKASAIAIMFTGLTVANILGVPFGTWLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHH
HYGWRSTFWAVTLVGVLAFAVIALLVPANAAKPEASNLKKDLAVLTRAPLLLGLLTTVLS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WVGVFAAFTYIAPMLTKITGFAESAVSPILLVFGAGLVVGNLAGGRLADRWLVPTVYGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VVLAAVLGALTFALHNAVAAVIFVGLLGAVAFATVAPLQMWVLEKAQGAGQSLASSFNIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEE
AFNLGNAIGAWLGGVVIDHGLGLGAVPWVAALVPLAAVPVAWWAGRLEAGRALTPAAAE
EEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]