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The map label for this gene is cph2 [H]

Identifier: 158421902

GI number: 158421902

Start: 323566

End: 325272

Strand: Direct

Name: cph2 [H]

Synonym: AZC_0278

Alternate gene names: 158421902

Gene position: 323566-325272 (Clockwise)

Preceding gene: 158421897

Following gene: 158421908

Centisome position: 6.03

GC content: 71.0

Gene sequence:

>1707_bases
TTGCGTTGGCGTGGCAACGATCGGCCCTCGGGCCTCGCGGACAACACTGTTGATCCGCCCGCAAAACCGGCGCGGGGCGG
CAGCATCCGGCTGCGCATCGTCTTGCTGATTCTGCTCATCACCGTGCCCGTTTCGGTGGAACGGGTGCTGAGCCTCATGG
CTGATCGGGCCGAGCGTATCATGGATACGCAAACCATGTTGCACGACATGGCCGTGCGCGCGGCGCTGGCGCAGCAGGAA
GTTCTGGTCTCGGCCAGCGCCATGCTGGAGGTGCTGAGCCGTCAGGCGGATTGGCTTCTGGCCGATCCGGCCGCCTGCCA
GCGCCTCATGGAGCGCCTCAACAGCGAGGTGAGCGGCGTGCAGGGGCTCTATCTGGCCGCGCCGGACGGGCGGGTTGTCT
GCGCCAGCTCCCGCGCCACCGTCGGCCGCAACGTCTCCGAGCGGCCTTACTTCCAGCGGGCGCTCGCCAGCCGCCAGCCG
GTGCTGAGCGACCTCTTCCGGGGCAGCTCCCTCCTCGCCTCACTGGTGCTGTCCAAGGCCGAGCGCGACGACAACCAGCG
CGTCATCGCCGTGGTGGCGGCGGGGCTCGACCTGCAATGGCTCTCCCGCATCGCCGCCGAGACGGGCGCGTCGGCGGGCG
TGACGGTGGATGTCATCGATTCGGCCGGCACCTCCCTGGTGCGCTATCCGCCGAGCCCCGACATCGTGGGCCGGAATTTC
GCCGATGCCCCGCTGGTGCGGGCGACGGTGGGGCGCGACGAAGGGCATGCGCGCGTGGAAGGCCTCGACGGCGTGCGGCG
CTATGTGGCCTTCGCGCGCTTCGGCGGCACCGACGTGCGCATCGTGCTCGGCATGGACGAGGCGGCGATCCTCGCGCCCA
TCGACCGGGAGATCCTCTCCTCGGTGCTCCTGCACTTCTCCGTGGTGCTGGCGGTGCTGGTCATTTCGTGGTTCGCCGCC
GACCGGCTCGTGGTGCTGCCGATCCGCCGTCTCGCGCAGCAGGTCTCGTCGCTCGGCGCCGGCGACGGGCCGGAGGCCTC
GCTCCAGCCGGAGGCGCTGCACGATGTGGGCGTGCAGGAGTTCGCGCCGCTGGTGCGCGCCTTCGGCGATCTCGGCCGGC
GCCTCAACGAGCGCACGGAAGCCCTGCGCATGCTCAACGGGCGCCTCACGGCGCTCGCCCGCACGGATGGCCTCACCGGG
CTCGCCAACCGCCGCACCTTCGACGTGCAGCTCTCAGAGGACTGGGTCCGCACCCGCGAGACCGGCCAGCCGCTCGGCGT
GCTGATGATCGATGTGGACCACTTCAAGCCCTATAACGACACGCTCGGCCATCTTGCCGGCGACGAAGCCCTGCGGGCGG
TGGCGCGCATGCTCATCGCGGCGGTGGCCGGCACGCCCTATCTGGTCGCCCGCTATGGCGGCGAGGAATTCGTGGTGCTG
ATGCCCGGCGCCGGCCGGGATGCCGCCGAGGCCATCGCGCAGGATGTCCGCCGCCTCGTGGAGACGCTGGAGATCGTCCA
TCCTTCCGCCGCCTATCGCCGCCTCACCGTCAGCGTGGGTGTGGCGGTAGCCATGCCGCTGGAGGGGGATTCGCCGGACG
CCCTTCTGGCGGCGGCGGATCAGGCGCTCTATGAGGCCAAGGCCGCCGGCCGCAACCGGGTGGTGATGGCGGCGAGCGCC
GTCTCGGAGGGCGCCCGCAAGCGCTGA

Upstream 100 bases:

>100_bases
TGCATTCGCACCGCTTCTGTTCATCACCGCCTCCTTATACGTTGCAATCGATCCCCCTTTTGCACTGAGATCGGGCGGGA
CGGAAGGAGAACCGCAGCTT

Downstream 100 bases:

>100_bases
GGCGGGAAGCGCCCTATAGGGCGTTCAGCCGACGCCGTTCTCGAGCCGCCGCACCGTCCGCAGCGGTCCGGCCGCTTCTG
CGATGCGGAGAAGCGCCGGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MRWRGNDRPSGLADNTVDPPAKPARGGSIRLRIVLLILLITVPVSVERVLSLMADRAERIMDTQTMLHDMAVRAALAQQE
VLVSASAMLEVLSRQADWLLADPAACQRLMERLNSEVSGVQGLYLAAPDGRVVCASSRATVGRNVSERPYFQRALASRQP
VLSDLFRGSSLLASLVLSKAERDDNQRVIAVVAAGLDLQWLSRIAAETGASAGVTVDVIDSAGTSLVRYPPSPDIVGRNF
ADAPLVRATVGRDEGHARVEGLDGVRRYVAFARFGGTDVRIVLGMDEAAILAPIDREILSSVLLHFSVVLAVLVISWFAA
DRLVVLPIRRLAQQVSSLGAGDGPEASLQPEALHDVGVQEFAPLVRAFGDLGRRLNERTEALRMLNGRLTALARTDGLTG
LANRRTFDVQLSEDWVRTRETGQPLGVLMIDVDHFKPYNDTLGHLAGDEALRAVARMLIAAVAGTPYLVARYGGEEFVVL
MPGAGRDAAEAIAQDVRRLVETLEIVHPSAAYRRLTVSVGVAVAMPLEGDSPDALLAAADQALYEAKAAGRNRVVMAASA
VSEGARKR

Sequences:

>Translated_568_residues
MRWRGNDRPSGLADNTVDPPAKPARGGSIRLRIVLLILLITVPVSVERVLSLMADRAERIMDTQTMLHDMAVRAALAQQE
VLVSASAMLEVLSRQADWLLADPAACQRLMERLNSEVSGVQGLYLAAPDGRVVCASSRATVGRNVSERPYFQRALASRQP
VLSDLFRGSSLLASLVLSKAERDDNQRVIAVVAAGLDLQWLSRIAAETGASAGVTVDVIDSAGTSLVRYPPSPDIVGRNF
ADAPLVRATVGRDEGHARVEGLDGVRRYVAFARFGGTDVRIVLGMDEAAILAPIDREILSSVLLHFSVVLAVLVISWFAA
DRLVVLPIRRLAQQVSSLGAGDGPEASLQPEALHDVGVQEFAPLVRAFGDLGRRLNERTEALRMLNGRLTALARTDGLTG
LANRRTFDVQLSEDWVRTRETGQPLGVLMIDVDHFKPYNDTLGHLAGDEALRAVARMLIAAVAGTPYLVARYGGEEFVVL
MPGAGRDAAEAIAQDVRRLVETLEIVHPSAAYRRLTVSVGVAVAMPLEGDSPDALLAAADQALYEAKAAGRNRVVMAASA
VSEGARKR
>Mature_568_residues
MRWRGNDRPSGLADNTVDPPAKPARGGSIRLRIVLLILLITVPVSVERVLSLMADRAERIMDTQTMLHDMAVRAALAQQE
VLVSASAMLEVLSRQADWLLADPAACQRLMERLNSEVSGVQGLYLAAPDGRVVCASSRATVGRNVSERPYFQRALASRQP
VLSDLFRGSSLLASLVLSKAERDDNQRVIAVVAAGLDLQWLSRIAAETGASAGVTVDVIDSAGTSLVRYPPSPDIVGRNF
ADAPLVRATVGRDEGHARVEGLDGVRRYVAFARFGGTDVRIVLGMDEAAILAPIDREILSSVLLHFSVVLAVLVISWFAA
DRLVVLPIRRLAQQVSSLGAGDGPEASLQPEALHDVGVQEFAPLVRAFGDLGRRLNERTEALRMLNGRLTALARTDGLTG
LANRRTFDVQLSEDWVRTRETGQPLGVLMIDVDHFKPYNDTLGHLAGDEALRAVARMLIAAVAGTPYLVARYGGEEFVVL
MPGAGRDAAEAIAQDVRRLVETLEIVHPSAAYRRLTVSVGVAVAMPLEGDSPDALLAAADQALYEAKAAGRNRVVMAASA
VSEGARKR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=38.5964912280702, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081881, Length=237, Percent_Identity=37.1308016877637, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=37.3493975903614, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=39.1304347826087, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=37.0588235294118, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=32.7777777777778, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.8983050847458, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=33.1491712707182, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=135, Percent_Identity=39.2592592592593, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=34.5679012345679, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=198, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=188, Percent_Identity=30.8510638297872, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 61007; Mature: 61007

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWRGNDRPSGLADNTVDPPAKPARGGSIRLRIVLLILLITVPVSVERVLSLMADRAERI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
MDTQTMLHDMAVRAALAQQEVLVSASAMLEVLSRQADWLLADPAACQRLMERLNSEVSGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCHHHCCC
QGLYLAAPDGRVVCASSRATVGRNVSERPYFQRALASRQPVLSDLFRGSSLLASLVLSKA
CEEEEECCCCCEEEECCCCHHCCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH
ERDDNQRVIAVVAAGLDLQWLSRIAAETGASAGVTVDVIDSAGTSLVRYPPSPDIVGRNF
CCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCC
ADAPLVRATVGRDEGHARVEGLDGVRRYVAFARFGGTDVRIVLGMDEAAILAPIDREILS
CCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCHHHHH
SVLLHFSVVLAVLVISWFAADRLVVLPIRRLAQQVSSLGAGDGPEASLQPEALHDVGVQE
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHH
FAPLVRAFGDLGRRLNERTEALRMLNGRLTALARTDGLTGLANRRTFDVQLSEDWVRTRE
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEEECHHHHHHHC
TGQPLGVLMIDVDHFKPYNDTLGHLAGDEALRAVARMLIAAVAGTPYLVARYGGEEFVVL
CCCCCEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEE
MPGAGRDAAEAIAQDVRRLVETLEIVHPSAAYRRLTVSVGVAVAMPLEGDSPDALLAAAD
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECEEEEEECCCCCCCHHHHHHH
QALYEAKAAGRNRVVMAASAVSEGARKR
HHHHHHHHCCCCEEEEEHHHHHCCCCCC
>Mature Secondary Structure
MRWRGNDRPSGLADNTVDPPAKPARGGSIRLRIVLLILLITVPVSVERVLSLMADRAERI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
MDTQTMLHDMAVRAALAQQEVLVSASAMLEVLSRQADWLLADPAACQRLMERLNSEVSGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCHHHCCC
QGLYLAAPDGRVVCASSRATVGRNVSERPYFQRALASRQPVLSDLFRGSSLLASLVLSKA
CEEEEECCCCCEEEECCCCHHCCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH
ERDDNQRVIAVVAAGLDLQWLSRIAAETGASAGVTVDVIDSAGTSLVRYPPSPDIVGRNF
CCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCC
ADAPLVRATVGRDEGHARVEGLDGVRRYVAFARFGGTDVRIVLGMDEAAILAPIDREILS
CCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCHHHHH
SVLLHFSVVLAVLVISWFAADRLVVLPIRRLAQQVSSLGAGDGPEASLQPEALHDVGVQE
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHH
FAPLVRAFGDLGRRLNERTEALRMLNGRLTALARTDGLTGLANRRTFDVQLSEDWVRTRE
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEEECHHHHHHHC
TGQPLGVLMIDVDHFKPYNDTLGHLAGDEALRAVARMLIAAVAGTPYLVARYGGEEFVVL
CCCCCEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEE
MPGAGRDAAEAIAQDVRRLVETLEIVHPSAAYRRLTVSVGVAVAMPLEGDSPDALLAAAD
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECEEEEEECCCCCCCHHHHHHH
QALYEAKAAGRNRVVMAASAVSEGARKR
HHHHHHHHCCCCEEEEEHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]