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The map label for this gene is dapD [H]

Identifier: 158421838

GI number: 158421838

Start: 257064

End: 257930

Strand: Direct

Name: dapD [H]

Synonym: AZC_0214

Alternate gene names: 158421838

Gene position: 257064-257930 (Clockwise)

Preceding gene: 158421837

Following gene: 158421839

Centisome position: 4.79

GC content: 70.01

Gene sequence:

>867_bases
ATGTCGATCGAGCTTGGCCGCGCGCAGGATCCGGCGCTCCAGAAGATCATCACGGACGCTTTCGAGGCGCGGGCCGAGAT
CGGCTTCTCCACCGCCGGCCAGATCCGCGAGGCGGTGAACGAGGCGCTGGCGCTGCTCGATTCCGGCGCCGCCCGCGTGG
CCGAGCCCGCCGCTGATGGCTCCTGGCAGGTGAACCAGTGGCTGAAGAAGGCGGTGCTGCTCTCCTTCCGCCTCAATGAC
ATGGACCTCATCCCCGGCGGCCCCGGCGGGGCGGCCTGGTGGGACAAGGTGCCCTCCAAGTTCGCCAAGTGGGGCGCCTC
GGAATTCCGCGCCGCCGGCTTCCGCGCCGTGCCCGGCGCCATCGTGCGCCAGTCCGCCTACATCGCGCCCAACGTGGTGC
TGATGCCCTCCTTCGTGAACCTCGGCGCCCATGTGGGCGAGGGCACCATGGTGGACACCTGGGCGACGGTGGGCTCCTGC
GCGCAGATCGGCAAGCGGGTGCATCTGTCCGGCGGCGTCGGCATCGGCGGCGTGCTGGAGCCCCTCCAGGCCGGCCCGGT
CATCATCGAGGACGACTGCTTCATCGGCGCCCGCTCCGAGGTGGTCGAGGGCGTGGTGGTGCGCAAGGGCTCCGTGCTCT
CCATGGGCGTCTTCATCTCCGCCTCCACCAAGATCATCGACCGCACCACGGGCGAGGTCTTCATCGGCGAGGTGCCGGCC
TATTCCGTGGTGGTGCCCGGCTCGATGCCCGGCAAGCCCCTGCCGGACGGCACGCCCGGCCCCTCGCTGTATTGCGCCGT
GATCGTGAAGCGCGTGGACGAGAAGACCCGCGCCAAGACCTCCATCAACGACCTGCTGCGCGACTGA

Upstream 100 bases:

>100_bases
AACGCGGCTGAACGTCTAGACTGGAGCCTCCGGTGCCAGCGCGCCCGGGGGGAGGACTACCCGGCGGCCTTGCCCGCACG
GTCTTGAGAAGGGGAATTTC

Downstream 100 bases:

>100_bases
GCGCGTGTTTCGCCAGCCGGCCCCCAGTGGGCCGGCTGGCGCTCTGCCCCGGCCGACGCCGTCCGCCCCGGCCGGTGCGG
CGGGCGAAAGGCGCATCTTT

Product: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSIELGRAQDPALQKIITDAFEARAEIGFSTAGQIREAVNEALALLDSGAARVAEPAADGSWQVNQWLKKAVLLSFRLND
MDLIPGGPGGAAWWDKVPSKFAKWGASEFRAAGFRAVPGAIVRQSAYIAPNVVLMPSFVNLGAHVGEGTMVDTWATVGSC
AQIGKRVHLSGGVGIGGVLEPLQAGPVIIEDDCFIGARSEVVEGVVVRKGSVLSMGVFISASTKIIDRTTGEVFIGEVPA
YSVVVPGSMPGKPLPDGTPGPSLYCAVIVKRVDEKTRAKTSINDLLRD

Sequences:

>Translated_288_residues
MSIELGRAQDPALQKIITDAFEARAEIGFSTAGQIREAVNEALALLDSGAARVAEPAADGSWQVNQWLKKAVLLSFRLND
MDLIPGGPGGAAWWDKVPSKFAKWGASEFRAAGFRAVPGAIVRQSAYIAPNVVLMPSFVNLGAHVGEGTMVDTWATVGSC
AQIGKRVHLSGGVGIGGVLEPLQAGPVIIEDDCFIGARSEVVEGVVVRKGSVLSMGVFISASTKIIDRTTGEVFIGEVPA
YSVVVPGSMPGKPLPDGTPGPSLYCAVIVKRVDEKTRAKTSINDLLRD
>Mature_287_residues
SIELGRAQDPALQKIITDAFEARAEIGFSTAGQIREAVNEALALLDSGAARVAEPAADGSWQVNQWLKKAVLLSFRLNDM
DLIPGGPGGAAWWDKVPSKFAKWGASEFRAAGFRAVPGAIVRQSAYIAPNVVLMPSFVNLGAHVGEGTMVDTWATVGSCA
QIGKRVHLSGGVGIGGVLEPLQAGPVIIEDDCFIGARSEVVEGVVVRKGSVLSMGVFISASTKIIDRTTGEVFIGEVPAY
SVVVPGSMPGKPLPDGTPGPSLYCAVIVKRVDEKTRAKTSINDLLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=276, Percent_Identity=66.304347826087, Blast_Score=326, Evalue=9e-91,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 30239; Mature: 30108

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIELGRAQDPALQKIITDAFEARAEIGFSTAGQIREAVNEALALLDSGAARVAEPAADG
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
SWQVNQWLKKAVLLSFRLNDMDLIPGGPGGAAWWDKVPSKFAKWGASEFRAAGFRAVPGA
CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCHH
IVRQSAYIAPNVVLMPSFVNLGAHVGEGTMVDTWATVGSCAQIGKRVHLSGGVGIGGVLE
HHHCCCCCCCCEEEECHHHHCCCCCCCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHH
PLQAGPVIIEDDCFIGARSEVVEGVVVRKGSVLSMGVFISASTKIIDRTTGEVFIGEVPA
HHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCC
YSVVVPGSMPGKPLPDGTPGPSLYCAVIVKRVDEKTRAKTSINDLLRD
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIELGRAQDPALQKIITDAFEARAEIGFSTAGQIREAVNEALALLDSGAARVAEPAADG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
SWQVNQWLKKAVLLSFRLNDMDLIPGGPGGAAWWDKVPSKFAKWGASEFRAAGFRAVPGA
CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCHH
IVRQSAYIAPNVVLMPSFVNLGAHVGEGTMVDTWATVGSCAQIGKRVHLSGGVGIGGVLE
HHHCCCCCCCCEEEECHHHHCCCCCCCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHH
PLQAGPVIIEDDCFIGARSEVVEGVVVRKGSVLSMGVFISASTKIIDRTTGEVFIGEVPA
HHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCC
YSVVVPGSMPGKPLPDGTPGPSLYCAVIVKRVDEKTRAKTSINDLLRD
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]