BacMap

Definition	Azorhizobium caulinodans ORS 571, complete genome.
Accession	NC_009937
Length	5,369,772

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The map label for this gene is ykvO [H]

Identifier: 158421830

GI number: 158421830

Start: 248012

End: 248746

Strand: Direct

Name: ykvO [H]

Synonym: AZC_0206

Alternate gene names: 158421830

Gene position: 248012-248746 (Clockwise)

Preceding gene: 158421828

Following gene: 158421832

Centisome position: 4.62

GC content: 68.3

Gene sequence:

>735_bases
ATGGACAGGCTTAAGGGTAAGACCGCCGTAGTGACCGGCGGCGGGAGCGGCATCGGACTGGGCGCCGCGCGACGGTTCGT
GGAGGAAGGCGCGTTCGTCTATCTGTTCGGCCGGCGCGCCGACGTTCTGGAAGCCGCCGCGAAGGAACTCGGCTCCTCCG
CACGCGCCGTGCCGGGCTCGGTGACGGATCTCGCCGACCTCGACCGGCTCTATGCGGCGGTGAAGAGCGAACGCGGCGGG
CTCGACATCGTGTTCGCCAACGCCGGCACCGGCAATTTCGCCGCGCTCGGGGCGATCACGCCGGACCAGTACGAGCAGAC
CTTCGACGTCAATGTGAAGGGTGTTCTCTTCACCGTACAGAAGGCCCTGCCGCTGATGCGGGCGGGCGGCTCGATCATCC
TGACCGGCTCCACGACCGGCACGATGGGCACGCCGCAATTCAGCATCTACAGCGCCAGCAAGGCTGCGGTGCGGAACTTC
GCGCGCAGCTGGGCCGAGGATCTGCGGGGCACCGGCATCCGGGTCAACGTCCTCTCGCCCGGACCGACCCTCACGGATCT
CGCCCTTGAGGTGGTGGGCAAGGAGGCGTTCGAAGCCCTTGGCGCCACGACCCCGCTCGGCCGCATCGGCGATCCCTCAG
AGACAGGCGCTGTAGCGGCCTTCCTCGCCTCCTCCGACAGCAGCTTCATGACCGGCGGAGAGGTGTTCGTGGACGGCGGC
TTCGCCCAGGTGTGA

Upstream 100 bases:

>100_bases
GCCTGTCTGTCGTCATGCACGGGTACTTACCAAAAGGTGCATACTTGTCAATTTGTGCGTTCCCAGCCAACTGAGAGCCA
CCTCATTGAAGGAGCACGTC

Downstream 100 bases:

>100_bases
GGCTTGACGCCACTGGGGCTCCGCTCTCCGGAGCGGGGCCCCTCAGGGCGCTGGAGGCGACAGCGGCGCGCCCTCTGCCG
CCAGCGGCTTGCCATAGAGG

Product: glucose dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDRLKGKTAVVTGGGSGIGLGAARRFVEEGAFVYLFGRRADVLEAAAKELGSSARAVPGSVTDLADLDRLYAAVKSERGG
LDIVFANAGTGNFAALGAITPDQYEQTFDVNVKGVLFTVQKALPLMRAGGSIILTGSTTGTMGTPQFSIYSASKAAVRNF
ARSWAEDLRGTGIRVNVLSPGPTLTDLALEVVGKEAFEALGATTPLGRIGDPSETGAVAAFLASSDSSFMTGGEVFVDGG
FAQV

Sequences:

>Translated_244_residues
MDRLKGKTAVVTGGGSGIGLGAARRFVEEGAFVYLFGRRADVLEAAAKELGSSARAVPGSVTDLADLDRLYAAVKSERGG
LDIVFANAGTGNFAALGAITPDQYEQTFDVNVKGVLFTVQKALPLMRAGGSIILTGSTTGTMGTPQFSIYSASKAAVRNF
ARSWAEDLRGTGIRVNVLSPGPTLTDLALEVVGKEAFEALGATTPLGRIGDPSETGAVAAFLASSDSSFMTGGEVFVDGG
FAQV
>Mature_244_residues
MDRLKGKTAVVTGGGSGIGLGAARRFVEEGAFVYLFGRRADVLEAAAKELGSSARAVPGSVTDLADLDRLYAAVKSERGG
LDIVFANAGTGNFAALGAITPDQYEQTFDVNVKGVLFTVQKALPLMRAGGSIILTGSTTGTMGTPQFSIYSASKAAVRNF
ARSWAEDLRGTGIRVNVLSPGPTLTDLALEVVGKEAFEALGATTPLGRIGDPSETGAVAAFLASSDSSFMTGGEVFVDGG
FAQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.520325203252, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=29.718875502008, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=29.8387096774194, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=28.4, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI40254992, Length=237, Percent_Identity=30.379746835443, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=32.0652173913043, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=31.7269076305221, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI59889578, Length=224, Percent_Identity=33.0357142857143, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=30.3501945525292, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=28.0632411067194, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI210032110, Length=183, Percent_Identity=30.0546448087432, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=27.8225806451613, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI223718074, Length=194, Percent_Identity=32.9896907216495, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4557649, Length=192, Percent_Identity=29.6875, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI142976729, Length=184, Percent_Identity=28.804347826087, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI20149619, Length=218, Percent_Identity=31.1926605504587, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=26.0162601626016, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI209862901, Length=205, Percent_Identity=30.2439024390244, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923983, Length=205, Percent_Identity=30.2439024390244, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI32455239, Length=181, Percent_Identity=29.2817679558011, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI5031765, Length=181, Percent_Identity=29.2817679558011, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4503301, Length=222, Percent_Identity=30.1801801801802, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI83715985, Length=253, Percent_Identity=29.2490118577075, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=31.219512195122, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=36.0323886639676, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=33.8582677165354, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=31.7073170731707, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=31.1475409836066, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=34.3873517786561, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787820, Length=176, Percent_Identity=34.6590909090909, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=32.9268292682927, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=28.1746031746032, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=28.7449392712551, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=30.6878306878307, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788891, Length=258, Percent_Identity=28.6821705426357, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787526, Length=240, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=24.6963562753036, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787545, Length=257, Percent_Identity=29.1828793774319, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=34.3511450381679, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=32.9501915708812, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=35.7414448669202, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=33.206106870229, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=31.0344827586207, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=34.469696969697, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=31.8007662835249, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=32.4427480916031, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=30.6513409961686, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=31.0344827586207, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=32.156862745098, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=31.8007662835249, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=30.9917355371901, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=31.0344827586207, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=31.4393939393939, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=28.3524904214559, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=28.4, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=30.078125, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=29.6992481203008, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=244, Percent_Identity=30.327868852459, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=26.4227642276423, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=30.6569343065693, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=28.1124497991968, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=31.6602316602317, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=29.3877551020408, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=27.2357723577236, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=30.9803921568627, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=209, Percent_Identity=25.8373205741627, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=29.1005291005291, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=188, Percent_Identity=29.2553191489362, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=29.2490118577075, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6322067, Length=189, Percent_Identity=32.2751322751323, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=222, Percent_Identity=31.5315315315315, Blast_Score=76, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322227, Length=240, Percent_Identity=25.8333333333333, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=35.3413654618474, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=32.6530612244898, Blast_Score=124, Evalue=6e-29,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=31.2, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=31.6, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=31.5573770491803, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=31.6205533596838, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=29.5566502463054, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=28.4552845528455, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI116007238, Length=225, Percent_Identity=27.5555555555556, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24644337, Length=246, Percent_Identity=33.739837398374, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24641232, Length=214, Percent_Identity=28.5046728971963, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007234, Length=203, Percent_Identity=31.5270935960591, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=29.6875, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=29.2553191489362, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=29.2553191489362, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI116007232, Length=193, Percent_Identity=31.6062176165803, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24640492, Length=182, Percent_Identity=28.021978021978, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281364494, Length=210, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24584744, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI28574402, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221331218, Length=196, Percent_Identity=29.0816326530612, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665243, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571387, Length=216, Percent_Identity=26.8518518518519, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25022; Mature: 25022

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLKGKTAVVTGGGSGIGLGAARRFVEEGAFVYLFGRRADVLEAAAKELGSSARAVPGS
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCC
VTDLADLDRLYAAVKSERGGLDIVFANAGTGNFAALGAITPDQYEQTFDVNVKGVLFTVQ
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCHHHHCCEECCCCCHHEEEHH
KALPLMRAGGSIILTGSTTGTMGTPQFSIYSASKAAVRNFARSWAEDLRGTGIRVNVLSP
HHHHHHHCCCCEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECC
GPTLTDLALEVVGKEAFEALGATTPLGRIGDPSETGAVAAFLASSDSSFMTGGEVFVDGG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCEEEECCC
FAQV
CCCC
>Mature Secondary Structure
MDRLKGKTAVVTGGGSGIGLGAARRFVEEGAFVYLFGRRADVLEAAAKELGSSARAVPGS
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCC
VTDLADLDRLYAAVKSERGGLDIVFANAGTGNFAALGAITPDQYEQTFDVNVKGVLFTVQ
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCHHHHCCEECCCCCHHEEEHH
KALPLMRAGGSIILTGSTTGTMGTPQFSIYSASKAAVRNFARSWAEDLRGTGIRVNVLSP
HHHHHHHCCCCEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECC
GPTLTDLALEVVGKEAFEALGATTPLGRIGDPSETGAVAAFLASSDSSFMTGGEVFVDGG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCEEEECCC
FAQV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]