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The map label for this gene is himD

Identifier: 15835949

GI number: 15835949

Start: 461263

End: 461565

Strand: Reverse

Name: himD

Synonym: CPj0416

Alternate gene names: 15835949

Gene position: 461565-461263 (Counterclockwise)

Preceding gene: 15835950

Following gene: 15835948

Centisome position: 37.63

GC content: 40.26

Gene sequence:

>303_bases
ATGGCTACCATGACAAAGAAGAAACTAATCAGCACGATCTCACAAGATCACAAAATTCATCCTAATCACGTACGTACCGT
GATTCAGAATTTTCTAGATAAAATGACCGACGCCTTGGTTAAAGGTGACAGGCTTGAGTTTAGAGATTTTGGTGTGTTGC
AAGTAGTAGAAAGAAAACCAAAGGTAGGACGTAATCCTAAGAATGCAGCAGTCCCCATTCATATTCCTGCTAGACGCGCT
GTAAAGTTTACTCCAGGGAAAAGAATGAAGCGCTTGATAGAAACTCCGAATAAGCATTCTTAA

Upstream 100 bases:

>100_bases
AAGGATGAATAGATATGATGAGCTTAGACTTCAAAAGTTTATTATTTACGGTTACTCAACGAGCTACTTTAGGGCACTTT
AATAGGAGGCATTGTCTAAT

Downstream 100 bases:

>100_bases
TTCTTGTAGTCTTCTTTGTCTCAGTTGTTAGAGTCAGACCGGTTTTTTACCGGGCTTGACTCTAATTTTTGTTATTATTA
TCGTTTGGTGCAATGCTTTT

Product: integration host factor alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKVGRNPKNAAVPIHIPARRA
VKFTPGKRMKRLIETPNKHS

Sequences:

>Translated_100_residues
MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKVGRNPKNAAVPIHIPARRA
VKFTPGKRMKRLIETPNKHS
>Mature_99_residues
ATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKVGRNPKNAAVPIHIPARRAV
KFTPGKRMKRLIETPNKHS

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11474; Mature: 11343

Theoretical pI: Translated: 11.74; Mature: 11.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKP
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHCC
KVGRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPNKHS
CCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
ATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKP
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHCC
KVGRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPNKHS
CCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]