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The map label for this gene is hctB

Identifier: 15835917

GI number: 15835917

Start: 431568

End: 432086

Strand: Reverse

Name: hctB

Synonym: CPj0384

Alternate gene names: 15835917

Gene position: 432086-431568 (Counterclockwise)

Preceding gene: 15835918

Following gene: 15835916

Centisome position: 35.23

GC content: 42.97

Gene sequence:

>519_bases
ATGATTGGAGCGCAAAAAAAGCAAAGCGGTAAAAAGACAGCTTCAAGAGCTGTACGGAAGCCTGCTAAAAAAGTTGCGGC
TAAACGTACGGTTAAAAAAGCTACTGTTCGCAAAACCGCTGTAAAAAAACCTGCAGTTCGTAAGACGGCTGCTAAAAAGA
CAGTAGCAAAGAAGACTACAGCTAAGAGAACAGTTCGTAAGACTGTTGCTAAGAAGCCTGCAGTTAAGAAAGTTGCTGCT
AAACGTGTAGTAAAAAAGACAGTAGCAAAGAAGACTACAGCTAAGAGAGCGGTTCGCAAGACTGTTGCTAAGAAGCCTGT
AGCTAGAAAAACTACAGTGGCTAAAGGTTCTCCTAAGAAAGCTGCAGCCTGTGCTTTAGCATGCCACAAAAACCATAAGC
ATACATCTAGTTGTAAACGTGTCTGTTCTTCAACAGCTACGAGAAAGCATGGCTCTAAAAGCCGTGTTCGTACAGCTCAT
GGCTGGCGTCACCAACTGATCAAAATGATGTCTCGATAA

Upstream 100 bases:

>100_bases
TAGTTTTTTTAAAATAAAAGTCATTTTTTTTATTAAAGTTTTCAATCGTCCCTGCCGATAGATCAGGTAAGTAATTACCT
GTCTAATTAGGGGAATAAAG

Downstream 100 bases:

>100_bases
TTTGTGATTTTCGCATTATTGCTCATGTTAACGGGAAAGGGAAACATTGGGTTTCCTTCCCGTTTTTCTTTTTAAGGTTA
AAAAGCTTTATAGAGCGAGA

Product: histone-like protein 2

Products: NA

Alternate protein names: HC2 nucleoprotein

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MIGAQKKQSGKKTASRAVRKPAKKVAAKRTVKKATVRKTAVKKPAVRKTAAKKTVAKKTTAKRTVRKTVAKKPAVKKVAA
KRVVKKTVAKKTTAKRAVRKTVAKKPVARKTTVAKGSPKKAAACALACHKNHKHTSSCKRVCSSTATRKHGSKSRVRTAH
GWRHQLIKMMSR

Sequences:

>Translated_172_residues
MIGAQKKQSGKKTASRAVRKPAKKVAAKRTVKKATVRKTAVKKPAVRKTAAKKTVAKKTTAKRTVRKTVAKKPAVKKVAA
KRVVKKTVAKKTTAKRAVRKTVAKKPVARKTTVAKGSPKKAAACALACHKNHKHTSSCKRVCSSTATRKHGSKSRVRTAH
GWRHQLIKMMSR
>Mature_172_residues
MIGAQKKQSGKKTASRAVRKPAKKVAAKRTVKKATVRKTAVKKPAVRKTAAKKTVAKKTTAKRTVRKTVAKKPAVKKVAA
KRVVKKTVAKKTTAKRAVRKTVAKKPVARKTTVAKGSPKKAAACALACHKNHKHTSSCKRVCSSTATRKHGSKSRVRTAH
GWRHQLIKMMSR

Specific function: Might have a role in establishing the nucleoid structure of elementary bodies

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone H1/H5 family. HCT subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HCT2_CHLPN (Q9Z8F9)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   F72083
- PIR:   F86538
- RefSeq:   NP_224584.1
- RefSeq:   NP_300441.1
- RefSeq:   NP_444919.1
- RefSeq:   NP_876670.1
- GeneID:   1467077
- GeneID:   894919
- GeneID:   919233
- GeneID:   963847
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0371
- KEGG:   cpn:CPn0384
- KEGG:   cpt:CpB0396
- TIGR:   CP_0371
- OMA:   RKPVAKR
- ProtClustDB:   CLSK400539
- BioCyc:   CPNE115711:CP_0371-MONOMER
- BioCyc:   CPNE115713:CPN0384-MONOMER
- BioCyc:   CPNE138677:CPJ0384-MONOMER
- BioCyc:   CPNE182082:CPB0396-MONOMER
- InterPro:   IPR009970

Pfam domain/function: PF07382 HC2

EC number: NA

Molecular weight: Translated: 18730; Mature: 18730

Theoretical pI: Translated: 12.92; Mature: 12.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGAQKKQSGKKTASRAVRKPAKKVAAKRTVKKATVRKTAVKKPAVRKTAAKKTVAKKTT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
AKRTVRKTVAKKPAVKKVAAKRVVKKTVAKKTTAKRAVRKTVAKKPVARKTTVAKGSPKK
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHH
AAACALACHKNHKHTSSCKRVCSSTATRKHGSKSRVRTAHGWRHQLIKMMSR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIGAQKKQSGKKTASRAVRKPAKKVAAKRTVKKATVRKTAVKKPAVRKTAAKKTVAKKTT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
AKRTVRKTVAKKPAVKKVAAKRVVKKTVAKKTTAKRAVRKTVAKKPVARKTTVAKGSPKK
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHH
AAACALACHKNHKHTSSCKRVCSSTATRKHGSKSRVRTAHGWRHQLIKMMSR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362