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The map label for this gene is ytgC

Identifier: 15835880

GI number: 15835880

Start: 389298

End: 390644

Strand: Reverse

Name: ytgC

Synonym: CPj0346

Alternate gene names: NA

Gene position: 390644-389298 (Counterclockwise)

Preceding gene: 15835881

Following gene: 15835879

Centisome position: 31.85

GC content: 39.12

Gene sequence:

>1347_bases
ATGCTCAGTTGTGTTTTTTCTGATACGATTTTCTTATCTAGTTTTTTAGCTGTCACTTTGATTTGTATGACCACAGCTTT
GTGGGGGACAATTCTCTTGATTAGCAAGCAGCCTCTTTTAAGCGAAAGTTTATCTCACGCGTCGTATCCAGGACTTCTAG
TTGGAGCTTTGATGGCGCAATATGTTTTCTCATTGCAAGCTTCTATTTTTTGGATTGTGTTGTTTGGGTGTGCTGCTTCG
GTATTTGGTTATGGGATCATTGTTTTCTTAGGGAAAGTATGTAAATTACATAAAGACTCCGCCCTTTGTTTTGTTCTTGT
GGTATTCTTTGCTATCGGAGTGATTTTAGCCAGTTATGTCAAGGAAAGTAGCCCTACGCTATACAATCGCATTAACGCCT
ATCTATATGGGCAAGCAGCCACTTTAGGTTTTCTTGAAGCTACGTTGGCTGCGATCGTCTTTTGTGCTTCGTTATTTGCT
TTATGGTGGTGGTATCGACAAATTGTTGTGACTACTTTTGATAAAGATTTTGCTGTTACTTGTGGCTTAAAGACTGTTCT
TTATGAAGCACTCAGTCTAATTTTTATATCGTTGGTGATCGTAAGTGGAGTTCGAAGCGTAGGGATTGTTTTAATTTCTG
CTATGTTTGTGGCTCCTTCTTTAGGTGCTCGTCAGCTTTCCGATCGTCTAAGTACAATTCTTATCCTTTCTGCATTCTTT
GGAGGGATTAGCGGAGCTTTAGGAAGCTATATCTCTGTAGCATTCACATGTCGTGCTATTATAGGGCAACAGGCGGTGCC
TGTAACCTTGCCTACGGGACCTTTGGTTGTCATTTGTGCTGGATTATTGGCCGGTCTATGTTTGCTTTTTTCTCCAAAAT
CTGGGTGGGTCATTCGTTTTGTCCGTAGGAAGCACTTTTCGTTTTCAAAGGATCAAGAACACCTTTTAAAGGTGTTTTGG
CATATTTCTCATAATCGTTTAGAGAACATTAGTGTTCGAGATTTTGTCTGTAGTTATAAGTATCAGGAGTATTTTGGGCC
TAAGCCTTTCCCTAGATGGAGAGTTCAGATTTTAGAATGGCGGGGTTATGTTAAAAAAGAACAAGATTATTATCGACTCA
CAAAAAAAGGAAGAAGTGAGGCCTTAAGATTAGTTCGTGCTCACAGATTATGGGAATCGTATCTTGTGAATTCTTTAGAT
TTTAGCAAGGAAAGTGTTCATGAGTTGGCTGAGGAAATAGAGCATGTTCTTACTGAAGAATTGGATCATACCTTGACAGA
GATTCTCAATGATCCTTGTTATGATCCTCATCGACAAATTATCCCAAATAAAAAAAAGGAAGTCTAA

Upstream 100 bases:

>100_bases
TGAATGGAGACACTATTTTCCAAACGTATGGTTGTGAAATTGAACTTTTGGAACAAACCCTGAAGCTCTCTCGAGGAAAA
CAATTTGGATCGTGCTGATT

Downstream 100 bases:

>100_bases
TGGCTTTGGGACCTTCTCCTTATTATGGAGTATCTTTTTTCCAATTTTTTTCAGTATTTTTTTCGAGACTGTTTTCTGGA
AGTCTTTTCACGGGTTCTCT

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MLSCVFSDTIFLSSFLAVTLICMTTALWGTILLISKQPLLSESLSHASYPGLLVGALMAQYVFSLQASIFWIVLFGCAAS
VFGYGIIVFLGKVCKLHKDSALCFVLVVFFAIGVILASYVKESSPTLYNRINAYLYGQAATLGFLEATLAAIVFCASLFA
LWWWYRQIVVTTFDKDFAVTCGLKTVLYEALSLIFISLVIVSGVRSVGIVLISAMFVAPSLGARQLSDRLSTILILSAFF
GGISGALGSYISVAFTCRAIIGQQAVPVTLPTGPLVVICAGLLAGLCLLFSPKSGWVIRFVRRKHFSFSKDQEHLLKVFW
HISHNRLENISVRDFVCSYKYQEYFGPKPFPRWRVQILEWRGYVKKEQDYYRLTKKGRSEALRLVRAHRLWESYLVNSLD
FSKESVHELAEEIEHVLTEELDHTLTEILNDPCYDPHRQIIPNKKKEV

Sequences:

>Translated_448_residues
MLSCVFSDTIFLSSFLAVTLICMTTALWGTILLISKQPLLSESLSHASYPGLLVGALMAQYVFSLQASIFWIVLFGCAAS
VFGYGIIVFLGKVCKLHKDSALCFVLVVFFAIGVILASYVKESSPTLYNRINAYLYGQAATLGFLEATLAAIVFCASLFA
LWWWYRQIVVTTFDKDFAVTCGLKTVLYEALSLIFISLVIVSGVRSVGIVLISAMFVAPSLGARQLSDRLSTILILSAFF
GGISGALGSYISVAFTCRAIIGQQAVPVTLPTGPLVVICAGLLAGLCLLFSPKSGWVIRFVRRKHFSFSKDQEHLLKVFW
HISHNRLENISVRDFVCSYKYQEYFGPKPFPRWRVQILEWRGYVKKEQDYYRLTKKGRSEALRLVRAHRLWESYLVNSLD
FSKESVHELAEEIEHVLTEELDHTLTEILNDPCYDPHRQIIPNKKKEV
>Mature_448_residues
MLSCVFSDTIFLSSFLAVTLICMTTALWGTILLISKQPLLSESLSHASYPGLLVGALMAQYVFSLQASIFWIVLFGCAAS
VFGYGIIVFLGKVCKLHKDSALCFVLVVFFAIGVILASYVKESSPTLYNRINAYLYGQAATLGFLEATLAAIVFCASLFA
LWWWYRQIVVTTFDKDFAVTCGLKTVLYEALSLIFISLVIVSGVRSVGIVLISAMFVAPSLGARQLSDRLSTILILSAFF
GGISGALGSYISVAFTCRAIIGQQAVPVTLPTGPLVVICAGLLAGLCLLFSPKSGWVIRFVRRKHFSFSKDQEHLLKVFW
HISHNRLENISVRDFVCSYKYQEYFGPKPFPRWRVQILEWRGYVKKEQDYYRLTKKGRSEALRLVRAHRLWESYLVNSLD
FSKESVHELAEEIEHVLTEELDHTLTEILNDPCYDPHRQIIPNKKKEV

Specific function: Part of an ATP-driven transport system CPn_0346/CPn_0347/CPn_0348/CPn_0349 for a metal

COG id: COG1108

COG function: function code P; ABC-type Mn2+/Zn2+ transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-3 integral membrane protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y347_CHLPN (Q9Z8J6)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   A72089
- PIR:   A81581
- PIR:   A86534
- RefSeq:   NP_224547.1
- RefSeq:   NP_300404.1
- RefSeq:   NP_444962.1
- RefSeq:   NP_876628.1
- ProteinModelPortal:   Q9Z8J6
- SMR:   Q9Z8J6
- GeneID:   1467035
- GeneID:   895188
- GeneID:   919119
- GeneID:   962762
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0413
- KEGG:   cpj:CPj0347
- KEGG:   cpn:CPn0347
- KEGG:   cpt:CpB0354
- TIGR:   CP_0413
- HOGENOM:   HBG413934
- OMA:   GSTAGML
- ProtClustDB:   CLSK871165
- BioCyc:   CPNE115711:CP_0413-MONOMER
- BioCyc:   CPNE115713:CPN0347-MONOMER
- BioCyc:   CPNE138677:CPJ0346-MONOMER
- BioCyc:   CPNE182082:CPB0354-MONOMER
- InterPro:   IPR001626
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.60.10
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00529

Pfam domain/function: PF00950 ABC-3; PF02742 Fe_dep_repr_C; SSF47979 HTH_DtxR

EC number: NA

Molecular weight: Translated: 50301; Mature: 50301

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb831948)-; HASH(0xc8a6b90)-; HASH(0xcb36744)-; HASH(0xc1529bc)-; HASH(0xcabfeb0)-; HASH(0xc7b1300)-; HASH(0xc0a8a78)-; HASH(0xc48aad8)-;

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSCVFSDTIFLSSFLAVTLICMTTALWGTILLISKQPLLSESLSHASYPGLLVGALMAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH
YVFSLQASIFWIVLFGCAASVFGYGIIVFLGKVCKLHKDSALCFVLVVFFAIGVILASYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KESSPTLYNRINAYLYGQAATLGFLEATLAAIVFCASLFALWWWYRQIVVTTFDKDFAVT
HCCCCHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
CGLKTVLYEALSLIFISLVIVSGVRSVGIVLISAMFVAPSLGARQLSDRLSTILILSAFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GGISGALGSYISVAFTCRAIIGQQAVPVTLPTGPLVVICAGLLAGLCLLFSPKSGWVIRF
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
VRRKHFSFSKDQEHLLKVFWHISHNRLENISVRDFVCSYKYQEYFGPKPFPRWRVQILEW
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RGYVKKEQDYYRLTKKGRSEALRLVRAHRLWESYLVNSLDFSKESVHELAEEIEHVLTEE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LDHTLTEILNDPCYDPHRQIIPNKKKEV
HHHHHHHHHCCCCCCCCHHHCCCCCCCH
>Mature Secondary Structure
MLSCVFSDTIFLSSFLAVTLICMTTALWGTILLISKQPLLSESLSHASYPGLLVGALMAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH
YVFSLQASIFWIVLFGCAASVFGYGIIVFLGKVCKLHKDSALCFVLVVFFAIGVILASYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KESSPTLYNRINAYLYGQAATLGFLEATLAAIVFCASLFALWWWYRQIVVTTFDKDFAVT
HCCCCHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
CGLKTVLYEALSLIFISLVIVSGVRSVGIVLISAMFVAPSLGARQLSDRLSTILILSAFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GGISGALGSYISVAFTCRAIIGQQAVPVTLPTGPLVVICAGLLAGLCLLFSPKSGWVIRF
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
VRRKHFSFSKDQEHLLKVFWHISHNRLENISVRDFVCSYKYQEYFGPKPFPRWRVQILEW
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RGYVKKEQDYYRLTKKGRSEALRLVRAHRLWESYLVNSLDFSKESVHELAEEIEHVLTEE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LDHTLTEILNDPCYDPHRQIIPNKKKEV
HHHHHHHHHCCCCCCCCHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362