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The map label for this gene is ytgD

Identifier: 15835879

GI number: 15835879

Start: 388324

End: 389298

Strand: Reverse

Name: ytgD

Synonym: CPj0345

Alternate gene names: NA

Gene position: 389298-388324 (Counterclockwise)

Preceding gene: 15835880

Following gene: 15835878

Centisome position: 31.74

GC content: 36.41

Gene sequence:

>975_bases
ATGGCTTTGGGACCTTCTCCTTATTATGGAGTATCTTTTTTCCAATTTTTTTCAGTATTTTTTTCGAGACTGTTTTCTGG
AAGTCTTTTCACGGGTTCTCTCTATATTGATGATATTCAGATTATAGTATTCCTTGCTATTTCCTGTTCAGGTGCTTTTG
CAGGAACTTTTTTAGTCTTGCGAAAGATGGCTATGTATGCGAATGCTGTCTCTCATACTGTCCTTTTTGGTTTGGTCTGT
GTTTGTTTGTTTACGCATCAACTGACGACCCTCTCTTTGGGTACCTTGACTCTTGCAGCAATGGCAACAGCTATGCTGAC
AGGGTTTCTTATTTACTTTATTCGTAATACTTTTAAAGTTTCAGAAGAGAGCAGCACCGCTCTAGTCTTTTCTTTATTAT
TCTCTCTGAGCCTTGTTTTGTTAGTCTTTATGACAAAGAATGCTCATATAGGAACGGAGCTTGTGTTAGGAAACGCAGAT
TCTTTAACGAAAGAGGATATTTTCCCTGTCACTATTGTGATTTTGGCTAATGCTGTAATTACTATTTTTGCGTTCCGTAG
CTTAGTTTGTTCTTCTTTCGATTCTGTATTTGCCTCTTCTTTAGGAATTCCTATTCGGTTGGTTGATTATTTGATTATTT
TTCAACTTTCTGCATGTCTTGTAGGAGCTTTTAAGGCTGTAGGTGTATTAATGGCACTTGCTTTTCTGATCATTCCATCG
CTTATTGCTAAGGTTATTGCAAAATCGATAAGGAGTCTTATGGCTTGGTCGTTAGTTTTTAGTATTGGTACAGCATTTTT
AGCTCCTGCATCTTCGAGAGCAATTCTTAGTGCTTATGATTTGGGGTTATCGACTTCGGGAATCTCTGTAGTGTTCTTGA
CGATGATGTACATCGTGGTTAAATTTATAAGCTATTTTCGAGGCTATTTTTCTAAAAATTTTGAAAAAATAAGTGAGAAA
AGTTCTCAATATTAG

Upstream 100 bases:

>100_bases
TTCTTACTGAAGAATTGGATCATACCTTGACAGAGATTCTCAATGATCCTTGTTATGATCCTCATCGACAAATTATCCCA
AATAAAAAAAAGGAAGTCTA

Downstream 100 bases:

>100_bases
CAGTGATTTAAAAGAATGAAATTTTAGAGTTTAGTCCACTTTAGTTAGAAATAGTATCAATAGAGAATTGACAATTCCTC
GACTTGCGGAGTATGATTCT

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MALGPSPYYGVSFFQFFSVFFSRLFSGSLFTGSLYIDDIQIIVFLAISCSGAFAGTFLVLRKMAMYANAVSHTVLFGLVC
VCLFTHQLTTLSLGTLTLAAMATAMLTGFLIYFIRNTFKVSEESSTALVFSLLFSLSLVLLVFMTKNAHIGTELVLGNAD
SLTKEDIFPVTIVILANAVITIFAFRSLVCSSFDSVFASSLGIPIRLVDYLIIFQLSACLVGAFKAVGVLMALAFLIIPS
LIAKVIAKSIRSLMAWSLVFSIGTAFLAPASSRAILSAYDLGLSTSGISVVFLTMMYIVVKFISYFRGYFSKNFEKISEK
SSQY

Sequences:

>Translated_324_residues
MALGPSPYYGVSFFQFFSVFFSRLFSGSLFTGSLYIDDIQIIVFLAISCSGAFAGTFLVLRKMAMYANAVSHTVLFGLVC
VCLFTHQLTTLSLGTLTLAAMATAMLTGFLIYFIRNTFKVSEESSTALVFSLLFSLSLVLLVFMTKNAHIGTELVLGNAD
SLTKEDIFPVTIVILANAVITIFAFRSLVCSSFDSVFASSLGIPIRLVDYLIIFQLSACLVGAFKAVGVLMALAFLIIPS
LIAKVIAKSIRSLMAWSLVFSIGTAFLAPASSRAILSAYDLGLSTSGISVVFLTMMYIVVKFISYFRGYFSKNFEKISEK
SSQY
>Mature_323_residues
ALGPSPYYGVSFFQFFSVFFSRLFSGSLFTGSLYIDDIQIIVFLAISCSGAFAGTFLVLRKMAMYANAVSHTVLFGLVCV
CLFTHQLTTLSLGTLTLAAMATAMLTGFLIYFIRNTFKVSEESSTALVFSLLFSLSLVLLVFMTKNAHIGTELVLGNADS
LTKEDIFPVTIVILANAVITIFAFRSLVCSSFDSVFASSLGIPIRLVDYLIIFQLSACLVGAFKAVGVLMALAFLIIPSL
IAKVIAKSIRSLMAWSLVFSIGTAFLAPASSRAILSAYDLGLSTSGISVVFLTMMYIVVKFISYFRGYFSKNFEKISEKS
SQY

Specific function: Part of an ATP-driven transport system CPn_0346/CPn_0347/CPn_0348/CPn_0349 for a metal

COG id: COG1108

COG function: function code P; ABC-type Mn2+/Zn2+ transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-3 integral membrane protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y346_CHLPN (Q9Z8J7)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   H72088
- PIR:   H86533
- RefSeq:   NP_224546.1
- RefSeq:   NP_300403.1
- RefSeq:   NP_444963.1
- RefSeq:   NP_876627.1
- ProteinModelPortal:   Q9Z8J7
- GeneID:   1467034
- GeneID:   895177
- GeneID:   919118
- GeneID:   962821
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0414
- KEGG:   cpj:CPj0346
- KEGG:   cpn:CPn0346
- KEGG:   cpt:CpB0353
- TIGR:   CP_0414
- HOGENOM:   HBG413935
- OMA:   MALLSCF
- ProtClustDB:   CLSK871166
- BioCyc:   CPNE115711:CP_0414-MONOMER
- BioCyc:   CPNE115713:CPN0346-MONOMER
- BioCyc:   CPNE138677:CPJ0345-MONOMER
- BioCyc:   CPNE182082:CPB0353-MONOMER
- InterPro:   IPR001626

Pfam domain/function: PF00950 ABC-3

EC number: NA

Molecular weight: Translated: 35249; Mature: 35118

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb6a6934)-; HASH(0xb1916e8)-; HASH(0xbb71860)-; HASH(0xbd0b3e0)-; HASH(0xc8d48fc)-; HASH(0xbb40a74)-; HASH(0xcbaca48)-; HASH(0x96a61b8)-; HASH(0xbc60140)-; HASH(0xb304020)-;

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGPSPYYGVSFFQFFSVFFSRLFSGSLFTGSLYIDDIQIIVFLAISCSGAFAGTFLVL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCEEHHHHHHHHHHHHHCCCHHHHHHHHH
RKMAMYANAVSHTVLFGLVCVCLFTHQLTTLSLGTLTLAAMATAMLTGFLIYFIRNTFKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SEESSTALVFSLLFSLSLVLLVFMTKNAHIGTELVLGNADSLTKEDIFPVTIVILANAVI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHCCHHHHHHHHHHHHH
TIFAFRSLVCSSFDSVFASSLGIPIRLVDYLIIFQLSACLVGAFKAVGVLMALAFLIIPS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAKVIAKSIRSLMAWSLVFSIGTAFLAPASSRAILSAYDLGLSTSGISVVFLTMMYIVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
KFISYFRGYFSKNFEKISEKSSQY
HHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure 
ALGPSPYYGVSFFQFFSVFFSRLFSGSLFTGSLYIDDIQIIVFLAISCSGAFAGTFLVL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCEEHHHHHHHHHHHHHCCCHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362