Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15835875

GI number: 15835875

Start: 383476

End: 384120

Strand: Direct

Name: Not Available

Synonym: CPj0340

Alternate gene names: 15835875

Gene position: 383476-384120 (Clockwise)

Preceding gene: 15835874

Following gene: 15835876

Centisome position: 31.26

GC content: 42.17

Gene sequence:

>645_bases
CTGCTTATCGTACTATCATCGCGCTCTTCAGCAGAGAAATGCTCTCTTAAAAAGCAAGCAAACCTCAACCGTGGCCTCTG
GGATGAACAGTTGGTCAAACACGGCACCTACCTATCCATCCAACGGTTTCTCTGTAGTCAGAAACTTTCAGATTTATCCA
AAGAACTTTGGTCTAACAACCTAAAAGAACAATTGGCCTTAAAATTTAAAAGTTCCTTAATTAAAAATTCTGATATTTCT
GAAACTGCTGTTGCCGAAGAATTTCATAAACAGCTCTCTATATCACTTCCTAGAGATCTCGAATGGGGAAGCACTTCCGT
TGGCCCTCATCGCGAAGACTTTCTACTCACTATGAACCAAATGCCTGTGTCTCAATTCTCTAGTGAAGGGCAGAAACACA
GTCTTTTGGCAATCTTAAGGCTTGCTGAGTGCCTATATCTAAAGCAATCTCATCACGTCTCCCCTCTAGTCTGTCTAGAT
GATATCCATGCTGGATTAGATAATGAACGTGTCGGTCAACTCCTTGACCCTGCCCCAACTCTGGGTCAGACTCTGATTAC
TTCCACCCATATGCATGGGGAACTTCCAAAAACAAGCCTTGTTTTAAGTATCGAGAACGCTCAAGTTTCTGAGCAAATTA
TCTAA

Upstream 100 bases:

>100_bases
TTTTCTCTTCAAAAGACCGCCTTCTAATTTCAGGAGCTCCTGCGGATCGTCGCCTTTTCCTAAATCTGCTTTTATCTCAA
TGCGATAACCACTATACCCT

Downstream 100 bases:

>100_bases
AACAATAACATCATTTTTCTTTTGCGTTAAAAGTAAGCGAATTAGTTATTTTTATAAATAAGTTTTAATAAACATATTCT
TTTTTAATAAAAAACTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MLIVLSSRSSAEKCSLKKQANLNRGLWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDIS
ETAVAEEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVSQFSSEGQKHSLLAILRLAECLYLKQSHHVSPLVCLD
DIHAGLDNERVGQLLDPAPTLGQTLITSTHMHGELPKTSLVLSIENAQVSEQII

Sequences:

>Translated_214_residues
MLIVLSSRSSAEKCSLKKQANLNRGLWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDIS
ETAVAEEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVSQFSSEGQKHSLLAILRLAECLYLKQSHHVSPLVCLD
DIHAGLDNERVGQLLDPAPTLGQTLITSTHMHGELPKTSLVLSIENAQVSEQII
>Mature_214_residues
MLIVLSSRSSAEKCSLKKQANLNRGLWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDIS
ETAVAEEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVSQFSSEGQKHSLLAILRLAECLYLKQSHHVSPLVCLD
DIHAGLDNERVGQLLDPAPTLGQTLITSTHMHGELPKTSLVLSIENAQVSEQII

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 23940; Mature: 23940

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIVLSSRSSAEKCSLKKQANLNRGLWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNN
CEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
LKEQLALKFKSSLIKNSDISETAVAEEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEECC
MPVSQFSSEGQKHSLLAILRLAECLYLKQSHHVSPLVCLDDIHAGLDNERVGQLLDPAPT
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCHHHHHHCCCCCH
LGQTLITSTHMHGELPKTSLVLSIENAQVSEQII
HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCC
>Mature Secondary Structure
MLIVLSSRSSAEKCSLKKQANLNRGLWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNN
CEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
LKEQLALKFKSSLIKNSDISETAVAEEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEECC
MPVSQFSSEGQKHSLLAILRLAECLYLKQSHHVSPLVCLDDIHAGLDNERVGQLLDPAPT
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCHHHHHHCCCCCH
LGQTLITSTHMHGELPKTSLVLSIENAQVSEQII
HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12682364 [H]