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The map label for this gene is yscU

Identifier: 15835857

GI number: 15835857

Start: 365871

End: 366953

Strand: Direct

Name: yscU

Synonym: CPj0322

Alternate gene names: 15835857

Gene position: 365871-366953 (Clockwise)

Preceding gene: 15835855

Following gene: 15835858

Centisome position: 29.83

GC content: 37.21

Gene sequence:

>1083_bases
ATGGGTGAAAAAACAGAAAAGGCCACGCCGAAGCGACTTAGAGATGCTCGGAAAAAAGGTCAAGTAGCAAAATCTCAGGA
TTTTCCTTCTGCGGTTACCTTTATCGTCTCTATGTTTACGGCTTTCTCCCTATCGACCTTTTTTTTCAAGCATTTAGGTG
GCTTTCTGGTTTCCATGCTCTCACAAGCTCCCACTCGCCATGATCCTGTAATTACCTTATTTTATCTTAAGAACTGTCTT
ATGCTTATTTTAACAGCATCACTTCCCTTACTGGGAGCTGTTGCTGTTGTTGGCGTCATTGTAGGTTTTCTTATCGTTGG
TCCTACATTTTCTACCGAAGTTTTTAAACCAGATATCAAGAAGTTCAACCCTATTGAGAACATCAAACAAAAGTTTAAAA
TAAAGACTCTCATAGAGCTAATCAAATCGATTTTAAAAATTTTTGGAGCAGCCTTAATTTTATACATAACGTTAAAAAGC
AAAGTCTCTTTAATTATAGAAACTGCAGGAGTCTCTCCTATAATTACTGCTCAAATCTTCAAAGAAATTTTTTATAAAGC
AGTAACCTCGATAGGAATTTTCTTTTTGATTGTTGCGATTCTTGACCTTGTCTATCAGCGCCACAATTTCGCTAAAGAAT
TAAAGATGGAGAAGTTTGAGGTTAAGCAGGAGTTTAAAGACACGGAAGGAAATCCTGAGATTAAAGGCCGTCGTCGACAA
ATTGCTCAAGAAATTGCCTATGAAGACTCGTCATCACAGGTGAAACATGCAAGCACCGTAGTCTCTAATCCCAAAGATAT
TGCTGTTGCTATTGGCTACATGCCTGAAAAATATAAAGCACCTTGGATCATTGCCATGGGCATCAACTTACGAGCTAAAA
GGATACTTGATGAAGCTGAAAAGTACGGAATTCCCATTATGCGAAACGTACCTTTAGCACATCAGCTTTTGGATGAAGGG
AAGGAATTAAAATTTATTCCAGAATCTACTTACGAAGCTATTGGAGAAATTCTACTCTATATCACTTCACTGAATGCGCA
AAATCCTAATAATAAAAATACTAACCAACCTGATCATTTATAA

Upstream 100 bases:

>100_bases
GAACAAAACGTTTGGGCTTCACTCTTGAGAAAAACAAGAGCATAAGGTAATTTGCAGATAATTCCGAATATAGTCCTCTT
AATCGAACCTTGGCAACAGC

Downstream 100 bases:

>100_bases
TGAATAAGCTACTCAATTTCGTCAGCAGAACACTTGGTGGCGATACCGCCTTAAACATGATCAATAAGTCCAGCGACTTA
ATCCTTGCTCTTTGGATGAT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLSQAPTRHDPVITLFYLKNCL
MLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKS
KVSLIIETAGVSPIITAQIFKEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
IAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAEKYGIPIMRNVPLAHQLLDEG
KELKFIPESTYEAIGEILLYITSLNAQNPNNKNTNQPDHL

Sequences:

>Translated_360_residues
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLSQAPTRHDPVITLFYLKNCL
MLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKS
KVSLIIETAGVSPIITAQIFKEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
IAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAEKYGIPIMRNVPLAHQLLDEG
KELKFIPESTYEAIGEILLYITSLNAQNPNNKNTNQPDHL
>Mature_359_residues
GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLSQAPTRHDPVITLFYLKNCLM
LILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSK
VSLIIETAGVSPIITAQIFKEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQI
AQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAEKYGIPIMRNVPLAHQLLDEGK
ELKFIPESTYEAIGEILLYITSLNAQNPNNKNTNQPDHL

Specific function: Component of the yop secretion machinery [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=367, Percent_Identity=28.0653950953678, Blast_Score=136, Evalue=2e-33,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 40411; Mature: 40280

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSML
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQAPTRHDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDIK
HHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHH
KFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQIF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHH
KEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
IAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAE
HHHHHHCCCCCHHHHHHHHHHCCCCHHEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH
KYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSLNAQNPNNKNTNQPDHL
HCCCCCEECCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSML
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQAPTRHDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDIK
HHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHH
KFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQIF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHH
KEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
IAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAE
HHHHHHCCCCCHHHHHHHHHHCCCCHHEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH
KYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSLNAQNPNNKNTNQPDHL
HCCCCCEECCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9746557; 9748454; 11586360 [H]