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The map label for this gene is sms

Identifier: 15835589

GI number: 15835589

Start: 67659

End: 69020

Strand: Reverse

Name: sms

Synonym: CPj0053

Alternate gene names: 15835589

Gene position: 69020-67659 (Counterclockwise)

Preceding gene: 15835590

Following gene: 15835588

Centisome position: 5.63

GC content: 43.83

Gene sequence:

>1362_bases
ATGGCAACAAAAACCAAAACACAATGGACGTGTAATCAATGTGGAGCTACTGCTCCTAAATGGTTAGGGCAATGTCCAGG
CTGCCACAACTGGAACTCTTTGGTTGAAGAATATGTCCCCCAGGCTCGATCTGGGACTTCGTCGCGATCTTCTACGAGTG
CGATTGCATTAAGCTCTATCGAATTAGAGAATGAATCTCGGATATTTATTGATCATGCGGGGTGGGATCGCATCCTTGGA
GGAGGGGTTGTTCGTGGAAGCCTCACTCTTCTTGGTGGGGATCCCGGCATTGGAAAGTCGACACTCCTTCTTCAAACTGC
GGAGAGATTGGCATCGCAAAAGTATAAAGTTCTTTATGTTTGTGGTGAAGAATCTGTAACGCAGACGTCTTTGAGAGCGA
AGCGTCTCAATATCTCATCACCTTTGATTTATTTATTTCCTGAAACAAACTTGGACAATATCAAGCAGCAAATAGCGACT
TTGGAACCTGATATTTTAATTATTGATTCCATTCAGATTATATTTAACCCCACGCTAAACTCTGCACCAGGATCGGTAGC
TCAGGTCCGAGAAGTTACTTATGAACTAATGCAGATTGCTAAAAGTGCGCAGATCACGACATTTATTATCGGCCACGTGA
CAAAATCTGGAGAGATCGCAGGTCCTAGGGTATTGGAACATCTTGTAGATACTGTACTTTACTTTGAGGGGAATTCCCAT
GCGAATTACCGTATGATTCGCTCTGTGAAAAATCGCTTTGGCCCTACAAATGAACTATTGATTCTCTCGATGCATGCAGA
TGGTCTCAAAGAGGTTAGCAACCCTTCAGGACTTTTCCTTCAGGAAAAGACGGGGCCAACGACAGGGTCTATGATCATTC
CTATTATAGAAGGCTCTGGGGCTCTTCTTATCGAGCTGCAGGCTTTGGTCTCTTCGTCTCCCTTTGCTAATCCAGTAAGG
AAGACTGCGGGATTCGATCCGAATCGCTTTTCTTTACTTTTAGCTGTATTAGAAAAAAGGGCTCAAGTCAAACTATTTAC
CATGGATGTCTTCCTATCCATTACGGGGGGTTTAAAGATTATAGAGCCTGCTGCGGACTTGGGGGCTCTACTTGCCGTTG
CTTCCTCGCTATACAACCGCCTGTTACCTAACAATTCCATTGTAATTGGAGAGGTAGGTCTTGGAGGAGAAATCCGTCAT
GTGGCTCATTTAGAGAGACGCATTAAAGAGGGAAAACTCATGGGATTTGAAGGTGCAATTCTTCCTGAGGGTCAAATTTC
ATCTCTTCCCAAGGAAATTCGAGAAAACTTTCGTTTACAAGGAGTGAAAACAATAAAAGATGCTATCCGTCTGTTACTCT
GA

Upstream 100 bases:

>100_bases
CAGATCCAGGTTCTTGTGAATCAAGAGGTTTGGGGAGAGGGAAATGCGTCATCCAAAAAGGAAGCAGAAAAAATTGCAGC
ACAACAGGCACTAGATACGT

Downstream 100 bases:

>100_bases
CCCCTGTTTAAGTGATTTCTGTCAGGGCAAGCGCCCCCTTCGTATTGCTTCTAGAAATTCAAATTTAGCGAAAGCTCAAG
TACATGAGTGTATTTCTTTG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MATKTKTQWTCNQCGATAPKWLGQCPGCHNWNSLVEEYVPQARSGTSSRSSTSAIALSSIELENESRIFIDHAGWDRILG
GGVVRGSLTLLGGDPGIGKSTLLLQTAERLASQKYKVLYVCGEESVTQTSLRAKRLNISSPLIYLFPETNLDNIKQQIAT
LEPDILIIDSIQIIFNPTLNSAPGSVAQVREVTYELMQIAKSAQITTFIIGHVTKSGEIAGPRVLEHLVDTVLYFEGNSH
ANYRMIRSVKNRFGPTNELLILSMHADGLKEVSNPSGLFLQEKTGPTTGSMIIPIIEGSGALLIELQALVSSSPFANPVR
KTAGFDPNRFSLLLAVLEKRAQVKLFTMDVFLSITGGLKIIEPAADLGALLAVASSLYNRLLPNNSIVIGEVGLGGEIRH
VAHLERRIKEGKLMGFEGAILPEGQISSLPKEIRENFRLQGVKTIKDAIRLLL

Sequences:

>Translated_453_residues
MATKTKTQWTCNQCGATAPKWLGQCPGCHNWNSLVEEYVPQARSGTSSRSSTSAIALSSIELENESRIFIDHAGWDRILG
GGVVRGSLTLLGGDPGIGKSTLLLQTAERLASQKYKVLYVCGEESVTQTSLRAKRLNISSPLIYLFPETNLDNIKQQIAT
LEPDILIIDSIQIIFNPTLNSAPGSVAQVREVTYELMQIAKSAQITTFIIGHVTKSGEIAGPRVLEHLVDTVLYFEGNSH
ANYRMIRSVKNRFGPTNELLILSMHADGLKEVSNPSGLFLQEKTGPTTGSMIIPIIEGSGALLIELQALVSSSPFANPVR
KTAGFDPNRFSLLLAVLEKRAQVKLFTMDVFLSITGGLKIIEPAADLGALLAVASSLYNRLLPNNSIVIGEVGLGGEIRH
VAHLERRIKEGKLMGFEGAILPEGQISSLPKEIRENFRLQGVKTIKDAIRLLL
>Mature_452_residues
ATKTKTQWTCNQCGATAPKWLGQCPGCHNWNSLVEEYVPQARSGTSSRSSTSAIALSSIELENESRIFIDHAGWDRILGG
GVVRGSLTLLGGDPGIGKSTLLLQTAERLASQKYKVLYVCGEESVTQTSLRAKRLNISSPLIYLFPETNLDNIKQQIATL
EPDILIIDSIQIIFNPTLNSAPGSVAQVREVTYELMQIAKSAQITTFIIGHVTKSGEIAGPRVLEHLVDTVLYFEGNSHA
NYRMIRSVKNRFGPTNELLILSMHADGLKEVSNPSGLFLQEKTGPTTGSMIIPIIEGSGALLIELQALVSSSPFANPVRK
TAGFDPNRFSLLLAVLEKRAQVKLFTMDVFLSITGGLKIIEPAADLGALLAVASSLYNRLLPNNSIVIGEVGLGGEIRHV
AHLERRIKEGKLMGFEGAILPEGQISSLPKEIRENFRLQGVKTIKDAIRLLL

Specific function: May play a role in the repair of endogenous alkylation damage

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily

Homologues:

Organism=Escherichia coli, GI1790850, Length=461, Percent_Identity=42.9501084598698, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RADA_CHLPN (Q9Z9C8)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   C72126
- PIR:   F86497
- RefSeq:   NP_224261.1
- RefSeq:   NP_300113.1
- RefSeq:   NP_445264.1
- RefSeq:   NP_876330.1
- ProteinModelPortal:   Q9Z9C8
- GeneID:   1466737
- GeneID:   895591
- GeneID:   918842
- GeneID:   962773
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0722
- KEGG:   cpn:CPn0053
- KEGG:   cpt:CpB0054
- TIGR:   CP_0722
- HOGENOM:   HBG286573
- OMA:   IGVFEMT
- PhylomeDB:   Q9Z9C8
- ProtClustDB:   PRK11823
- BioCyc:   CPNE115711:CP_0722-MONOMER
- BioCyc:   CPNE115713:CPN0053-MONOMER
- BioCyc:   CPNE138677:CPJ0053-MONOMER
- BioCyc:   CPNE182082:CPB0054-MONOMER
- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR020568
- PRINTS:   PR01874
- SMART:   SM00382
- TIGRFAMs:   TIGR00416

Pfam domain/function: PF06745 KaiC; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: NA

Molecular weight: Translated: 49236; Mature: 49104

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKTKTQWTCNQCGATAPKWLGQCPGCHNWNSLVEEYVPQARSGTSSRSSTSAIALSSI
CCCCCCCCEEHHHCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE
ELENESRIFIDHAGWDRILGGGVVRGSLTLLGGDPGIGKSTLLLQTAERLASQKYKVLYV
EECCCCEEEEEECCCHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEE
CGEESVTQTSLRAKRLNISSPLIYLFPETNLDNIKQQIATLEPDILIIDSIQIIFNPTLN
ECCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECEEEEEECCCC
SAPGSVAQVREVTYELMQIAKSAQITTFIIGHVTKSGEIAGPRVLEHLVDTVLYFEGNSH
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCC
ANYRMIRSVKNRFGPTNELLILSMHADGLKEVSNPSGLFLQEKTGPTTGSMIIPIIEGSG
CCHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCEEEECCCCCCCCCEEEEEEECCC
ALLIELQALVSSSPFANPVRKTAGFDPNRFSLLLAVLEKRAQVKLFTMDVFLSITGGLKI
EEEEEEEHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEE
IEPAADLGALLAVASSLYNRLLPNNSIVIGEVGLGGEIRHVAHLERRIKEGKLMGFEGAI
ECCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCC
LPEGQISSLPKEIRENFRLQGVKTIKDAIRLLL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
>Mature Secondary Structure 
ATKTKTQWTCNQCGATAPKWLGQCPGCHNWNSLVEEYVPQARSGTSSRSSTSAIALSSI
CCCCCCCEEHHHCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE
ELENESRIFIDHAGWDRILGGGVVRGSLTLLGGDPGIGKSTLLLQTAERLASQKYKVLYV
EECCCCEEEEEECCCHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEE
CGEESVTQTSLRAKRLNISSPLIYLFPETNLDNIKQQIATLEPDILIIDSIQIIFNPTLN
ECCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECEEEEEECCCC
SAPGSVAQVREVTYELMQIAKSAQITTFIIGHVTKSGEIAGPRVLEHLVDTVLYFEGNSH
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCC
ANYRMIRSVKNRFGPTNELLILSMHADGLKEVSNPSGLFLQEKTGPTTGSMIIPIIEGSG
CCHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCEEEECCCCCCCCCEEEEEEECCC
ALLIELQALVSSSPFANPVRKTAGFDPNRFSLLLAVLEKRAQVKLFTMDVFLSITGGLKI
EEEEEEEHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEE
IEPAADLGALLAVASSLYNRLLPNNSIVIGEVGLGGEIRHVAHLERRIKEGKLMGFEGAI
ECCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCC
LPEGQISSLPKEIRENFRLQGVKTIKDAIRLLL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362