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The map label for this gene is pmp_4_2

Identifier: 15835554

GI number: 15835554

Start: 25765

End: 26844

Strand: Direct

Name: pmp_4_2

Synonym: CPj0017

Alternate gene names: 15835554

Gene position: 25765-26844 (Clockwise)

Preceding gene: 15835553

Following gene: 15835555

Centisome position: 2.1

GC content: 44.35

Gene sequence:

>1080_bases
ATACTACGAATCACTATGGGTATCAAGGGAACTGGAATAATTGTTTGGGTCGACGATGCAACTGCAAAAACAAAAAATGC
TACCTTAACTTGGACTAAAACAGGATACAAGCCGAATCCAGAACGTCAGGGACCTTTGGGTCCTAATAGCCTGTGGGGTT
CTTTTGTCGATGTCCGCTCCATTCAGAGCCTCATGGACCGGAGCACAAGTTCGTTATCTTCGTCAACAAATTTGTGGGTA
TCAGGAATCGCGGACTTTTTGCATGAAGATCAGAAAGGAAACCAACGTAGTTATCGTCATTCTAGCGCGGGTTATGCATT
AGGAGGAGGATTCTTCACGGCTTCTGAAAATTTCTTTAATTTTGCTTTTTGTCAGCTTTTTGGCTACGACAAGGACCATC
TTGTGGCTAAGAACCATACCCATGTATATGCAGGGGCAATGAGTTACCGACACCTCGGAGAGTCTAAGACCCTCGCTAAG
ATTTTGTCAGGAAATTCTGACTCCCTACCTTTTGTCTTCAATGCTCGGTTTGCTTATGGCCATACCGACAATAACATGAC
CACAAAGTACACTGGCTATTCTCCTGTTAAGGGAAGCTGGGGAAATGATGCCTTCGGTATAGAATGTGGAGGAGCTATCC
CGGTAGTTGCTTCAGGACGTCGGTCTTGGGTGGATACCCACACGCCATTTCTAAACCTAGAGATGATCTATGCACATCAG
AATGACTTTAAGGAAAACGGCACAGAAGGCCGTTCTTTCCAAAGTGAAGACCTCTTCAATCTAGCGGTTCCTGTAGGGAT
AAAATTTGAGAAATTCTCCGATAAGTCTACGTATGATCTCTCCATAGCTTACGTTCCCGATGTGATTCGTAATGATCCAG
GCTGCACGACAACTCTTATGGTTTCTGGGGATTCTTGGTCGACATGTGGTACAAGCTTGTCTAGACAAGCTCTTCTTGTA
CGTGCTGGAAATCATCATGCCTTTGCTTCAAACTTTGAAGTTTTCAGTCAGTTTGAAGTCGAGTTGCGAGGTTCTTCTCG
TAGCTATGCTATCGATCTTGGAGGAAGATTCGGATTTTAA

Upstream 100 bases:

>100_bases
GAGCATCATAATCTCAGTCAACAGCAGGTCTTTCCTTTAATAGAGCTTTCTGCACAAGGAACGATGACTACTACAGATAT
CCCCGATACCCCAATTCTAA

Downstream 100 bases:

>100_bases
TCCTAAGTTTTCCAACGAGATAGCATCAGGGTAAGCCAGGGCTCTATGTAAGAGATTTCATAGAGCCCTCTCTTTGTCTT
GCTTTTTGTATTTTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Outer membrane protein 5; Polymorphic membrane protein 10 [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MLRITMGIKGTGIIVWVDDATAKTKNATLTWTKTGYKPNPERQGPLGPNSLWGSFVDVRSIQSLMDRSTSSLSSSTNLWV
SGIADFLHEDQKGNQRSYRHSSAGYALGGGFFTASENFFNFAFCQLFGYDKDHLVAKNHTHVYAGAMSYRHLGESKTLAK
ILSGNSDSLPFVFNARFAYGHTDNNMTTKYTGYSPVKGSWGNDAFGIECGGAIPVVASGRRSWVDTHTPFLNLEMIYAHQ
NDFKENGTEGRSFQSEDLFNLAVPVGIKFEKFSDKSTYDLSIAYVPDVIRNDPGCTTTLMVSGDSWSTCGTSLSRQALLV
RAGNHHAFASNFEVFSQFEVELRGSSRSYAIDLGGRFGF

Sequences:

>Translated_359_residues
MLRITMGIKGTGIIVWVDDATAKTKNATLTWTKTGYKPNPERQGPLGPNSLWGSFVDVRSIQSLMDRSTSSLSSSTNLWV
SGIADFLHEDQKGNQRSYRHSSAGYALGGGFFTASENFFNFAFCQLFGYDKDHLVAKNHTHVYAGAMSYRHLGESKTLAK
ILSGNSDSLPFVFNARFAYGHTDNNMTTKYTGYSPVKGSWGNDAFGIECGGAIPVVASGRRSWVDTHTPFLNLEMIYAHQ
NDFKENGTEGRSFQSEDLFNLAVPVGIKFEKFSDKSTYDLSIAYVPDVIRNDPGCTTTLMVSGDSWSTCGTSLSRQALLV
RAGNHHAFASNFEVFSQFEVELRGSSRSYAIDLGGRFGF
>Mature_359_residues
MLRITMGIKGTGIIVWVDDATAKTKNATLTWTKTGYKPNPERQGPLGPNSLWGSFVDVRSIQSLMDRSTSSLSSSTNLWV
SGIADFLHEDQKGNQRSYRHSSAGYALGGGFFTASENFFNFAFCQLFGYDKDHLVAKNHTHVYAGAMSYRHLGESKTLAK
ILSGNSDSLPFVFNARFAYGHTDNNMTTKYTGYSPVKGSWGNDAFGIECGGAIPVVASGRRSWVDTHTPFLNLEMIYAHQ
NDFKENGTEGRSFQSEDLFNLAVPVGIKFEKFSDKSTYDLSIAYVPDVIRNDPGCTTTLMVSGDSWSTCGTSLSRQALLV
RAGNHHAFASNFEVFSQFEVELRGSSRSYAIDLGGRFGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR006315
- InterPro:   IPR006626
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 39516; Mature: 39516

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS00027 HOMEOBOX_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRITMGIKGTGIIVWVDDATAKTKNATLTWTKTGYKPNPERQGPLGPNSLWGSFVDVRS
CEEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
IQSLMDRSTSSLSSSTNLWVSGIADFLHEDQKGNQRSYRHSSAGYALGGGFFTASENFFN
HHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECEEEEECCCCCE
FAFCQLFGYDKDHLVAKNHTHVYAGAMSYRHLGESKTLAKILSGNSDSLPFVFNARFAYG
EEEEEEECCCCCCEEECCCCEEEEECHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEEEEC
HTDNNMTTKYTGYSPVKGSWGNDAFGIECGGAIPVVASGRRSWVDTHTPFLNLEMIYAHQ
CCCCCCEEEECCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEC
NDFKENGTEGRSFQSEDLFNLAVPVGIKFEKFSDKSTYDLSIAYVPDVIRNDPGCTTTLM
CCHHHCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEECCHHHCCCCCCEEEEE
VSGDSWSTCGTSLSRQALLVRAGNHHAFASNFEVFSQFEVELRGSSRSYAIDLGGRFGF
EECCCCCHHCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCEEEEECCCCCCC
>Mature Secondary Structure
MLRITMGIKGTGIIVWVDDATAKTKNATLTWTKTGYKPNPERQGPLGPNSLWGSFVDVRS
CEEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
IQSLMDRSTSSLSSSTNLWVSGIADFLHEDQKGNQRSYRHSSAGYALGGGFFTASENFFN
HHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECEEEEECCCCCE
FAFCQLFGYDKDHLVAKNHTHVYAGAMSYRHLGESKTLAKILSGNSDSLPFVFNARFAYG
EEEEEEECCCCCCEEECCCCEEEEECHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEEEEC
HTDNNMTTKYTGYSPVKGSWGNDAFGIECGGAIPVVASGRRSWVDTHTPFLNLEMIYAHQ
CCCCCCEEEECCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEC
NDFKENGTEGRSFQSEDLFNLAVPVGIKFEKFSDKSTYDLSIAYVPDVIRNDPGCTTTLM
CCHHHCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEECCHHHCCCCCCEEEEE
VSGDSWSTCGTSLSRQALLVRAGNHHAFASNFEVFSQFEVELRGSSRSYAIDLGGRFGF
EECCCCCHHCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10539856; 10684935; 10871362; 9864239 [H]