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The map label for this gene is pecS [H]

Identifier: 158338980

GI number: 158338980

Start: 5960640

End: 5961131

Strand: Reverse

Name: pecS [H]

Synonym: AM1_5899

Alternate gene names: 158338980

Gene position: 5961131-5960640 (Counterclockwise)

Preceding gene: 158338983

Following gene: 158338978

Centisome position: 91.66

GC content: 48.58

Gene sequence:

>492_bases
ATGGATACCGATGCAGTCGACGAAATTTTGGCCCAATGGCGGAGAGAACGCCCTGATTTAGATGTGTCGCCCATGGGGAC
AATTGGCCGCATGACCCGATTGGCCAAACATTTCCAAGGGGCAATGGGAGACACCTTTGCTAAATTTGGCTTGAATTCAG
GCGAGTTTGATGTCCTCGCCACTTTGCGACGGTCTGGGCAGCCCTATCAGCTTTCACCCACCCAGTTATTTCACGCCATG
ATGGTGTCCTCCGGGACCATGACTCATCGCATTGATTGTTTGGAAAAAGCCGCGTTGGTTGAACGTATCCCCGACCCTAA
CGATCGTCGAGGAAACCTGGTTCAGTTAACGGATAAAGGATTTGAGCTAATTGAAAAAACCGTTGAAACTCATGTCACCC
ATGAACACCTTCTTCTGAGTGCACTCGAGAAATCTGAAATAGACCGTCTTACTCAGTTACTCCGAAAGCTATTAGGCTCA
TTTGAGAAGTGA

Upstream 100 bases:

>100_bases
TGTCGAGATTCTAGCATTTATCTTGATGTCAAGTATCTTGGAATTAAGATTTATCAGATGTTAAGATAATCGGCATTCAA
ATGCTGAGCCATCTGTTCCC

Downstream 100 bases:

>100_bases
AAAAGTATTCTATCTGACAACAAATTCAACAAAGGGATGAAGAATTTCTTTTTGAAAAAGATATTCCAAATTAAGCGTAG
TAGATTCCCCAAAGAGATTA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MDTDAVDEILAQWRRERPDLDVSPMGTIGRMTRLAKHFQGAMGDTFAKFGLNSGEFDVLATLRRSGQPYQLSPTQLFHAM
MVSSGTMTHRIDCLEKAALVERIPDPNDRRGNLVQLTDKGFELIEKTVETHVTHEHLLLSALEKSEIDRLTQLLRKLLGS
FEK

Sequences:

>Translated_163_residues
MDTDAVDEILAQWRRERPDLDVSPMGTIGRMTRLAKHFQGAMGDTFAKFGLNSGEFDVLATLRRSGQPYQLSPTQLFHAM
MVSSGTMTHRIDCLEKAALVERIPDPNDRRGNLVQLTDKGFELIEKTVETHVTHEHLLLSALEKSEIDRLTQLLRKLLGS
FEK
>Mature_163_residues
MDTDAVDEILAQWRRERPDLDVSPMGTIGRMTRLAKHFQGAMGDTFAKFGLNSGEFDVLATLRRSGQPYQLSPTQLFHAM
MVSSGTMTHRIDCLEKAALVERIPDPNDRRGNLVQLTDKGFELIEKTVETHVTHEHLLLSALEKSEIDRLTQLLRKLLGS
FEK

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789040, Length=137, Percent_Identity=34.3065693430657, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18448; Mature: 18448

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTDAVDEILAQWRRERPDLDVSPMGTIGRMTRLAKHFQGAMGDTFAKFGLNSGEFDVLA
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TLRRSGQPYQLSPTQLFHAMMVSSGTMTHRIDCLEKAALVERIPDPNDRRGNLVQLTDKG
HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH
FELIEKTVETHVTHEHLLLSALEKSEIDRLTQLLRKLLGSFEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTDAVDEILAQWRRERPDLDVSPMGTIGRMTRLAKHFQGAMGDTFAKFGLNSGEFDVLA
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TLRRSGQPYQLSPTQLFHAMMVSSGTMTHRIDCLEKAALVERIPDPNDRRGNLVQLTDKG
HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH
FELIEKTVETHVTHEHLLLSALEKSEIDRLTQLLRKLLGSFEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]