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The map label for this gene is ybfI [H]

Identifier: 158338927

GI number: 158338927

Start: 5914287

End: 5915165

Strand: Reverse

Name: ybfI [H]

Synonym: AM1_5844

Alternate gene names: 158338927

Gene position: 5915165-5914287 (Counterclockwise)

Preceding gene: 158338930

Following gene: 158338926

Centisome position: 90.95

GC content: 48.01

Gene sequence:

>879_bases
ATGGCTGATACTTACCAAAGTATCTATCCATCCGAACCACTTTTACGAAGTGGCGATATCGTTAGACCTACAGCCACTGA
ACTTTTAAGCCTCGAATACTTTGAAGCTGAGCCGGATACCATGCCGACCCAGATCTATGAGCAGCATCATATTCTGATCA
ACCTTAAAGATGAACCCCATCGGGTTGAGAATTGGCGAGATGACCAACATCGAGATTTCATCTATCGCAAAAATGAAATT
GTCGTGACACCTGCAGGGGTGGAAAGTGGCTGGCGTTGGTATGCGAAATCCAAGGTCATTGTCATCACGCTTAAGCCTGA
CAAAATGGAGCAGTTCGCGCAAAATGAGCTGGGGGTCCTCCTAAATCCAACACAGCTGAGTAGCATTCCTCAATTCATTG
ACGAAGACCTGACTGAGGCCGGGGTCCTATTACTCAACGCTCTGCAGTCAGAAGGGATTGGCTCTGCAGTGATGTTCGAG
TCCCTAGCACGGGTTTTTCTGGTCAAGCTGATTCAAAAATATGGGCTGGAACGGGATGAGGAGTATGCCTTCACCCAAAG
CTTCACAGCCCAGCACTATAAACGAGTGCTGGATTATATTGCTGATAATTTCGGTCAAACTATTATGCTGGAAGATCTCG
CGGGCCAGGCGAGTTTGAGCACCTACCACTTCTCGCGGTTATTTAAGCAGACCATTGGTCAAAGCCCCCATCAGTTTGTG
ATGACTTACCGGATTGAGCAGGCAAAAAAAATGCTGGCTACTCCCACCTCCATGATTGACATTGCTTTGCGTTGTGGCTT
TGCTGACCAAGCCCACTTCTCGCGGGTCTTTAAGAAATTCGAGGGGCAAACCCCTAAGGCATGGCGTAAAGCCCAATAG

Upstream 100 bases:

>100_bases
ACTCTGCCTGCCTATCAAGATTCAGTCGTAAGCGTATCTTGCAAAACAACATCAAGTTGAAATAATGCAGCTTCAAATCA
GCCCAAACTTGGATTGAGCT

Downstream 100 bases:

>100_bases
CAAGAATCTTCAAAAAATCGCCCAAGATACTTCAAGCTCTTCAGGGATGGCTGCTTATACATTGGCAAGTGTCAGACCAA
CACAAGCCACACAGGAGCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MADTYQSIYPSEPLLRSGDIVRPTATELLSLEYFEAEPDTMPTQIYEQHHILINLKDEPHRVENWRDDQHRDFIYRKNEI
VVTPAGVESGWRWYAKSKVIVITLKPDKMEQFAQNELGVLLNPTQLSSIPQFIDEDLTEAGVLLLNALQSEGIGSAVMFE
SLARVFLVKLIQKYGLERDEEYAFTQSFTAQHYKRVLDYIADNFGQTIMLEDLAGQASLSTYHFSRLFKQTIGQSPHQFV
MTYRIEQAKKMLATPTSMIDIALRCGFADQAHFSRVFKKFEGQTPKAWRKAQ

Sequences:

>Translated_292_residues
MADTYQSIYPSEPLLRSGDIVRPTATELLSLEYFEAEPDTMPTQIYEQHHILINLKDEPHRVENWRDDQHRDFIYRKNEI
VVTPAGVESGWRWYAKSKVIVITLKPDKMEQFAQNELGVLLNPTQLSSIPQFIDEDLTEAGVLLLNALQSEGIGSAVMFE
SLARVFLVKLIQKYGLERDEEYAFTQSFTAQHYKRVLDYIADNFGQTIMLEDLAGQASLSTYHFSRLFKQTIGQSPHQFV
MTYRIEQAKKMLATPTSMIDIALRCGFADQAHFSRVFKKFEGQTPKAWRKAQ
>Mature_291_residues
ADTYQSIYPSEPLLRSGDIVRPTATELLSLEYFEAEPDTMPTQIYEQHHILINLKDEPHRVENWRDDQHRDFIYRKNEIV
VTPAGVESGWRWYAKSKVIVITLKPDKMEQFAQNELGVLLNPTQLSSIPQFIDEDLTEAGVLLLNALQSEGIGSAVMFES
LARVFLVKLIQKYGLERDEEYAFTQSFTAQHYKRVLDYIADNFGQTIMLEDLAGQASLSTYHFSRLFKQTIGQSPHQFVM
TYRIEQAKKMLATPTSMIDIALRCGFADQAHFSRVFKKFEGQTPKAWRKAQ

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33652; Mature: 33521

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTYQSIYPSEPLLRSGDIVRPTATELLSLEYFEAEPDTMPTQIYEQHHILINLKDEPH
CCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEECCCCC
RVENWRDDQHRDFIYRKNEIVVTPAGVESGWRWYAKSKVIVITLKPDKMEQFAQNELGVL
HHHCCCCCCHHHHEEECCEEEEEECCCCCCCEEEECCEEEEEEECCHHHHHHHHCCCCEE
LNPTQLSSIPQFIDEDLTEAGVLLLNALQSEGIGSAVMFESLARVFLVKLIQKYGLERDE
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
EYAFTQSFTAQHYKRVLDYIADNFGQTIMLEDLAGQASLSTYHFSRLFKQTIGQSPHQFV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHHHHHCCCHHHHH
MTYRIEQAKKMLATPTSMIDIALRCGFADQAHFSRVFKKFEGQTPKAWRKAQ
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure 
ADTYQSIYPSEPLLRSGDIVRPTATELLSLEYFEAEPDTMPTQIYEQHHILINLKDEPH
CCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEECCCCC
RVENWRDDQHRDFIYRKNEIVVTPAGVESGWRWYAKSKVIVITLKPDKMEQFAQNELGVL
HHHCCCCCCHHHHEEECCEEEEEECCCCCCCEEEECCEEEEEEECCHHHHHHHHCCCCEE
LNPTQLSSIPQFIDEDLTEAGVLLLNALQSEGIGSAVMFESLARVFLVKLIQKYGLERDE
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
EYAFTQSFTAQHYKRVLDYIADNFGQTIMLEDLAGQASLSTYHFSRLFKQTIGQSPHQFV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHHHHHCCCHHHHH
MTYRIEQAKKMLATPTSMIDIALRCGFADQAHFSRVFKKFEGQTPKAWRKAQ
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]