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The map label for this gene is yjcF [C]

Identifier: 158338763

GI number: 158338763

Start: 5738261

End: 5739160

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_5674

Alternate gene names: 158338763

Gene position: 5739160-5738261 (Counterclockwise)

Preceding gene: 158338764

Following gene: 158338760

Centisome position: 88.24

GC content: 48.78

Gene sequence:

>900_bases
TTGCAGACCGTTTTAATTTGGGTGGATTACATGAAACAGTTGAATAAAGGCAGTCTTGTCATAGGAACAGCCCTGGCTTC
CTTCTCTATCGCATTTTTGCCCCTGAGTGCTGCCAGCAATAGCGCTCAGACTCCCAACCCGGAGCATCTCCAGCAGCTAC
AGGCCACCAACAGTTGTGATGGATGCGACCTCAGGGGAGCCAATTTGCAAGATCAAAATCTAAAGGGTGCTAGCTTGCAA
GGGGCGAACCTGCAAGGCGCTAATTTGCAGGGCGTTAATTTGGACGATGCCAATTTAGAAAGCGCTAATTTAAAGTACGC
CAATCTCAGCAAAGCAACTCTTAGACGGGCCAGCTTAACCACAACCCTCAAGCAAGCCACCAATTTGCAAGACGCCAATC
TCACCCAGGCAACCTTAGTCAAAACTAAGCTCAAAGGGGCCGATCTGCGTCGTGCCAACTTATTTGAAGCGACTCTCGAA
GATGCGGACTTTAGCGTTGCAGTGGTGGAAACGACCCAAGGCATTCGTCGTGTCTACTTCAGCGATTTGAGAGAGGCTAA
TTTCAATAAAAGTAATCTTAAGAATGCCACCCTTAACCAGGTCTATTTATCCAATGCCAACCTGAGCGAAGCCAACTTAA
AAGGGGCAAAGCTGAAGCAGGCCCAACTGAAGTACACCAACCTCAATGGGGCCAAGCTGAATAACGCGGATCTGCGGAAA
GCATCTTTAGAAAGCGTCAATCTTAGTGAAGCCGACCTCAGCAGCGCTCACCTAGGCAAGATTGCCATGAAAGATGTCAA
CTTGCGCGGTGCCAACTTGAGCAATGCAGACTTAAGCGGGGCTAAACTCTGTCAGATGGATATCCCCGCTTCTCTTCAAG
CCTTGGCAACCTGTAAGTAA

Upstream 100 bases:

>100_bases
ACGAAAATCCCTTCAGGCAGGCGTTTAGCAGTTTTCTGGTTCCTTAGCATTTTGTAACCTTGCCCTGATCACAGTACAGT
GATTAGAGAATAAATACCTA

Downstream 100 bases:

>100_bases
GACCTACTGGGGGATGCCATCCGGGAGGGTGGCCCCCGTTAGGTCGGCGTCCGTGAGTTTAATCCCCTTCACATTCGCAC
CACTCAAATCAGCTTCCTTG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MQTVLIWVDYMKQLNKGSLVIGTALASFSIAFLPLSAASNSAQTPNPEHLQQLQATNSCDGCDLRGANLQDQNLKGASLQ
GANLQGANLQGVNLDDANLESANLKYANLSKATLRRASLTTTLKQATNLQDANLTQATLVKTKLKGADLRRANLFEATLE
DADFSVAVVETTQGIRRVYFSDLREANFNKSNLKNATLNQVYLSNANLSEANLKGAKLKQAQLKYTNLNGAKLNNADLRK
ASLESVNLSEADLSSAHLGKIAMKDVNLRGANLSNADLSGAKLCQMDIPASLQALATCK

Sequences:

>Translated_299_residues
MQTVLIWVDYMKQLNKGSLVIGTALASFSIAFLPLSAASNSAQTPNPEHLQQLQATNSCDGCDLRGANLQDQNLKGASLQ
GANLQGANLQGVNLDDANLESANLKYANLSKATLRRASLTTTLKQATNLQDANLTQATLVKTKLKGADLRRANLFEATLE
DADFSVAVVETTQGIRRVYFSDLREANFNKSNLKNATLNQVYLSNANLSEANLKGAKLKQAQLKYTNLNGAKLNNADLRK
ASLESVNLSEADLSSAHLGKIAMKDVNLRGANLSNADLSGAKLCQMDIPASLQALATCK
>Mature_299_residues
MQTVLIWVDYMKQLNKGSLVIGTALASFSIAFLPLSAASNSAQTPNPEHLQQLQATNSCDGCDLRGANLQDQNLKGASLQ
GANLQGANLQGVNLDDANLESANLKYANLSKATLRRASLTTTLKQATNLQDANLTQATLVKTKLKGADLRRANLFEATLE
DADFSVAVVETTQGIRRVYFSDLREANFNKSNLKNATLNQVYLSNANLSEANLKGAKLKQAQLKYTNLNGAKLNNADLRK
ASLESVNLSEADLSSAHLGKIAMKDVNLRGANLSNADLSGAKLCQMDIPASLQALATCK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Drosophila melanogaster, GI221377802, Length=196, Percent_Identity=32.1428571428571, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 32025; Mature: 32025

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTVLIWVDYMKQLNKGSLVIGTALASFSIAFLPLSAASNSAQTPNPEHLQQLQATNSCD
CCEEEEEHHHHHHCCCCCEEEEEHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCC
GCDLRGANLQDQNLKGASLQGANLQGANLQGVNLDDANLESANLKYANLSKATLRRASLT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHHHHHH
TTLKQATNLQDANLTQATLVKTKLKGADLRRANLFEATLEDADFSVAVVETTQGIRRVYF
HHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH
SDLREANFNKSNLKNATLNQVYLSNANLSEANLKGAKLKQAQLKYTNLNGAKLNNADLRK
HHHHHCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEEEHEEEEEECCCCCCCCCCHHHH
ASLESVNLSEADLSSAHLGKIAMKDVNLRGANLSNADLSGAKLCQMDIPASLQALATCK
HHHCCCCCCHHHCCHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCC
>Mature Secondary Structure
MQTVLIWVDYMKQLNKGSLVIGTALASFSIAFLPLSAASNSAQTPNPEHLQQLQATNSCD
CCEEEEEHHHHHHCCCCCEEEEEHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCC
GCDLRGANLQDQNLKGASLQGANLQGANLQGVNLDDANLESANLKYANLSKATLRRASLT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHHHHHH
TTLKQATNLQDANLTQATLVKTKLKGADLRRANLFEATLEDADFSVAVVETTQGIRRVYF
HHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH
SDLREANFNKSNLKNATLNQVYLSNANLSEANLKGAKLKQAQLKYTNLNGAKLNNADLRK
HHHHHCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEEEHEEEEEECCCCCCCCCCHHHH
ASLESVNLSEADLSSAHLGKIAMKDVNLRGANLSNADLSGAKLCQMDIPASLQALATCK
HHHCCCCCCHHHCCHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA