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The map label for this gene is nodB [H]

Identifier: 158338760

GI number: 158338760

Start: 5736156

End: 5736947

Strand: Reverse

Name: nodB [H]

Synonym: AM1_5671

Alternate gene names: 158338760

Gene position: 5736947-5736156 (Counterclockwise)

Preceding gene: 158338763

Following gene: 158338759

Centisome position: 88.21

GC content: 51.26

Gene sequence:

>792_bases
ATGGCTAACTTTCGCTTCTTTGTTCGATACCGACTGCAAATCGCGGTCCTAGCCACAGGTTTATTCGTTGCCGTTCTGAT
CATCCTGTGGATGCAGCCCCGATGGGCGCTGGATCGTCTGACATCCTATATTTGTCCAGGGGCTAAATTCTATCTGCCCA
TGGATCAACCGCTTGTTGCCCTCACCATTGACGACGGCCCAGATGACCAGAGAATAGGCGACGCCAACACCACCCAAAAT
ATCTTGCAAACCTTGGCCCAGCACAACGCCAAAGCCACCTTTTTCCTGATCAGTAGTCAGATTACCCCGCAAAACCGAGC
CTTAATTGCCCAAATGGTCAGCCAAGGCCACGAGTTAGGTAATCATCTCACCGTTGATGAACCCAGCATTAACCTTTCCC
TGCCAGAATTCAAAGCAGCTTTGCAAATGGCCGAACAGGAGATCCTCGCCGCCTCAGAGAGTCAAACCTCTCTAGCATGG
ATGCGTCCAGGTAGTGGCCGATGTAATTTAGATATGGCCCAGATAGCCCAGCAACAAGGCTACAAAATCGCCCTGGGAGC
ACCCTGGCCCTATGACACGTCCCTGCCTTCTTCAGGGTTTGCCGCTCAGCAAATCTTGGCTAATGTCCAGCCTGGTAGCA
TTATTGTCCTCCATGATCATGGTCCTGAAGGAGCCTGGGGAATCCGAACCATCCAAACCCTCAACCAGGTTTTGCCCCAG
CTTAAACAAAAAGGATATCGAGTCGTCACCCTAACCGAGCTATACCGAGAATCCTCTAAATCCACCCCTTAA

Upstream 100 bases:

>100_bases
CTTTCCAGCTTTTGGAATTCCTGTCACGATTCTTGCGTTAAATTCCGCTGGAAGTCTTGCTGAACCATAGGATTCATCCC
GCCTCCATCCGTTGTTTTAA

Downstream 100 bases:

>100_bases
TCGGTCCCTCTCTTCTTCCTAAAACGCTGGATTAGGGACACCTCTTGTCTGGGTGATGACCATCACTCCCATCTCTGAAA
TCGATCACTGCTGTTGATGG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MANFRFFVRYRLQIAVLATGLFVAVLIILWMQPRWALDRLTSYICPGAKFYLPMDQPLVALTIDDGPDDQRIGDANTTQN
ILQTLAQHNAKATFFLISSQITPQNRALIAQMVSQGHELGNHLTVDEPSINLSLPEFKAALQMAEQEILAASESQTSLAW
MRPGSGRCNLDMAQIAQQQGYKIALGAPWPYDTSLPSSGFAAQQILANVQPGSIIVLHDHGPEGAWGIRTIQTLNQVLPQ
LKQKGYRVVTLTELYRESSKSTP

Sequences:

>Translated_263_residues
MANFRFFVRYRLQIAVLATGLFVAVLIILWMQPRWALDRLTSYICPGAKFYLPMDQPLVALTIDDGPDDQRIGDANTTQN
ILQTLAQHNAKATFFLISSQITPQNRALIAQMVSQGHELGNHLTVDEPSINLSLPEFKAALQMAEQEILAASESQTSLAW
MRPGSGRCNLDMAQIAQQQGYKIALGAPWPYDTSLPSSGFAAQQILANVQPGSIIVLHDHGPEGAWGIRTIQTLNQVLPQ
LKQKGYRVVTLTELYRESSKSTP
>Mature_262_residues
ANFRFFVRYRLQIAVLATGLFVAVLIILWMQPRWALDRLTSYICPGAKFYLPMDQPLVALTIDDGPDDQRIGDANTTQNI
LQTLAQHNAKATFFLISSQITPQNRALIAQMVSQGHELGNHLTVDEPSINLSLPEFKAALQMAEQEILAASESQTSLAWM
RPGSGRCNLDMAQIAQQQGYKIALGAPWPYDTSLPSSGFAAQQILANVQPGSIIVLHDHGPEGAWGIRTIQTLNQVLPQL
KQKGYRVVTLTELYRESSKSTP

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 29102; Mature: 28971

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANFRFFVRYRLQIAVLATGLFVAVLIILWMQPRWALDRLTSYICPGAKFYLPMDQPLVA
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCEEE
LTIDDGPDDQRIGDANTTQNILQTLAQHNAKATFFLISSQITPQNRALIAQMVSQGHELG
EEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
NHLTVDEPSINLSLPEFKAALQMAEQEILAASESQTSLAWMRPGSGRCNLDMAQIAQQQG
CEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCC
YKIALGAPWPYDTSLPSSGFAAQQILANVQPGSIIVLHDHGPEGAWGIRTIQTLNQVLPQ
CEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
LKQKGYRVVTLTELYRESSKSTP
HHHCCCEEEEHHHHHHHHCCCCC
>Mature Secondary Structure 
ANFRFFVRYRLQIAVLATGLFVAVLIILWMQPRWALDRLTSYICPGAKFYLPMDQPLVA
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCEEE
LTIDDGPDDQRIGDANTTQNILQTLAQHNAKATFFLISSQITPQNRALIAQMVSQGHELG
EEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
NHLTVDEPSINLSLPEFKAALQMAEQEILAASESQTSLAWMRPGSGRCNLDMAQIAQQQG
CEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCC
YKIALGAPWPYDTSLPSSGFAAQQILANVQPGSIIVLHDHGPEGAWGIRTIQTLNQVLPQ
CEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
LKQKGYRVVTLTELYRESSKSTP
HHHCCCEEEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]