Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 158338606

GI number: 158338606

Start: 5560085

End: 5561608

Strand: Reverse

Name: ompA [H]

Synonym: AM1_5510

Alternate gene names: 158338606

Gene position: 5561608-5560085 (Counterclockwise)

Preceding gene: 158338607

Following gene: 158338601

Centisome position: 85.51

GC content: 48.56

Gene sequence:

>1524_bases
TTGGGTTTAACTTTAGGACTGAGTGCAGGTGGGCTTTTGCTGTTGCAAAATACAGCCCCGGACCTGTTGCCGAGCCTACT
AGGGCAATCAGGAGACAATAGTGGTTCTAGACGATCGAAAGGAACCTTCAAGGTCTTAGGGGATACGTTTAGCGGCTACA
GTACCTTTCGTAATGACGCCTTTCAAGAGGCGTTGGGAGAACCAGGAATCCGCCTTGACTATGCGGATGAGTTTGATCAG
TCCCAACGGGCTCAGGCATTAGGGCAAGGTAAAGCAGATTTTATCGTTACGACCCTCGATCAGTTTCTGAAGCAAAAGCC
TAAAGGAAAAATTGTTGGCCTGATCGACCGAACGGTGGGGGCTGATGCAGTGGTATTGAATACGCGTCAGTTTCCTCAGC
TCAAATCCTTAATTAATCTCAGTCAACTGGTTAAGCAAGGGAAATCGAAACAATATTCCATTGTTTATGCTGGCGATACG
CCTAGTGAATATTTAGCCCTGGTCCTCGATACCAAGTTTGATGCCTTTAACCTCTCAGATTTCCGGGTAATCAAGGTGGA
GGACGCTTCCCAGTCCTGGAAGCTGATGCAAGATACGAAGGAAAATGTTGCGATCGCAGTTTTGTGGGAACCCTTTGTTT
CCCAAGCGCGCAAGCAAGGCCATACCGTCGTTCTTTCTAGCAAAGATGCCCCCAATACCATCGTGGATGTCTTGGTGGCC
TCAGACAAGGTAATTCAGTCTCAGCCAGAACAAATTTCGGCCTTTCTAGCCGCCTACTATCGACGCATTGAGTCCGGCAT
TAGCAATCGGTCTCAACTTCAAGACCAAATTGCGACTGATGGTGATTTATCTGCTCCCGATGCAGATACGGTCCTGAACG
GGATTAACTTTTTTACAGCCTTAGAAGCCCAAGACTGGATGCAGCAAGACGCACTCAACCAGCGGATTACGGCAACAGCC
GCTGTTTTGGTCCTGTCGGGCACGTTAACTCAGGTGCCGGAGAATCCCTCACAGCTCTATGACCCTCAGTTTGTGAGCCA
GGCGGCGGATAACACCAAAAAATTAATCGATATTGTTCGAGCTGATAATCCTGAACTCGCTAAAAAACTGGAAGGAAAGT
CGCCCTCCACCCAGACAGCATCTAAACCGACAGCTGATATCAAGTCTGCCCCCAGTATTGGCAACCTCAAAGTGCGAGGG
GAAGTGAAGTTTGCGGTAGGAGCCGCCAATTTAACTTCCTCGGGGCGTCAAACCTTGGATAAGCTATCTAAGGAAATTGC
GGAGTTTAACCCGGATACAGTTGCCGTGCGAGTGATTGGCCATACCTCTAAAACTGGGTCTGCTAGTTTAAATCAATCCC
TAAGCCAACAACGGGCTCAAGTAGTCGTTCAATATCTGAAACGATTGGGGATAAAGCAAGCGATTCAAGCGGAAGGGAAG
GGGTTCAGTGCACCGTTACCGGGCATTCCACCTAGTGATGCTCGCAATCAACGCACCGAAATTCGGTTAGTACGCATTAA
CTAA

Upstream 100 bases:

>100_bases
AATAAGATGCCTTTTGGGGCACGCTTGCTAGGATGGCTAGTTGTGGCACGTCTAGAGTGAGTCAATGCCTCAAAATAAAA
ATATCGCCCTCCTTGCGTCT

Downstream 100 bases:

>100_bases
CCTCACTCTTTAAGGCTGACGCAGGTGCTGCAGTAAGTCATAGAAGGGTTGCCAATCATCTTCTATCATGATTGGCTCCC
AAATAGCTTCAATTTGAGGA

Product: outer membrane protein A

Products: NA

Alternate protein names: Outer membrane protein II [H]

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MGLTLGLSAGGLLLLQNTAPDLLPSLLGQSGDNSGSRRSKGTFKVLGDTFSGYSTFRNDAFQEALGEPGIRLDYADEFDQ
SQRAQALGQGKADFIVTTLDQFLKQKPKGKIVGLIDRTVGADAVVLNTRQFPQLKSLINLSQLVKQGKSKQYSIVYAGDT
PSEYLALVLDTKFDAFNLSDFRVIKVEDASQSWKLMQDTKENVAIAVLWEPFVSQARKQGHTVVLSSKDAPNTIVDVLVA
SDKVIQSQPEQISAFLAAYYRRIESGISNRSQLQDQIATDGDLSAPDADTVLNGINFFTALEAQDWMQQDALNQRITATA
AVLVLSGTLTQVPENPSQLYDPQFVSQAADNTKKLIDIVRADNPELAKKLEGKSPSTQTASKPTADIKSAPSIGNLKVRG
EVKFAVGAANLTSSGRQTLDKLSKEIAEFNPDTVAVRVIGHTSKTGSASLNQSLSQQRAQVVVQYLKRLGIKQAIQAEGK
GFSAPLPGIPPSDARNQRTEIRLVRIN

Sequences:

>Translated_507_residues
MGLTLGLSAGGLLLLQNTAPDLLPSLLGQSGDNSGSRRSKGTFKVLGDTFSGYSTFRNDAFQEALGEPGIRLDYADEFDQ
SQRAQALGQGKADFIVTTLDQFLKQKPKGKIVGLIDRTVGADAVVLNTRQFPQLKSLINLSQLVKQGKSKQYSIVYAGDT
PSEYLALVLDTKFDAFNLSDFRVIKVEDASQSWKLMQDTKENVAIAVLWEPFVSQARKQGHTVVLSSKDAPNTIVDVLVA
SDKVIQSQPEQISAFLAAYYRRIESGISNRSQLQDQIATDGDLSAPDADTVLNGINFFTALEAQDWMQQDALNQRITATA
AVLVLSGTLTQVPENPSQLYDPQFVSQAADNTKKLIDIVRADNPELAKKLEGKSPSTQTASKPTADIKSAPSIGNLKVRG
EVKFAVGAANLTSSGRQTLDKLSKEIAEFNPDTVAVRVIGHTSKTGSASLNQSLSQQRAQVVVQYLKRLGIKQAIQAEGK
GFSAPLPGIPPSDARNQRTEIRLVRIN
>Mature_506_residues
GLTLGLSAGGLLLLQNTAPDLLPSLLGQSGDNSGSRRSKGTFKVLGDTFSGYSTFRNDAFQEALGEPGIRLDYADEFDQS
QRAQALGQGKADFIVTTLDQFLKQKPKGKIVGLIDRTVGADAVVLNTRQFPQLKSLINLSQLVKQGKSKQYSIVYAGDTP
SEYLALVLDTKFDAFNLSDFRVIKVEDASQSWKLMQDTKENVAIAVLWEPFVSQARKQGHTVVLSSKDAPNTIVDVLVAS
DKVIQSQPEQISAFLAAYYRRIESGISNRSQLQDQIATDGDLSAPDADTVLNGINFFTALEAQDWMQQDALNQRITATAA
VLVLSGTLTQVPENPSQLYDPQFVSQAADNTKKLIDIVRADNPELAKKLEGKSPSTQTASKPTADIKSAPSIGNLKVRGE
VKFAVGAANLTSSGRQTLDKLSKEIAEFNPDTVAVRVIGHTSKTGSASLNQSLSQQRAQVVVQYLKRLGIKQAIQAEGKG
FSAPLPGIPPSDARNQRTEIRLVRIN

Specific function: Required for the action of colicins K and L and for the stabilization of mating aggregates in conjugation. Serves as a receptor for a number of T-even like phages. Also acts as a porin with low permeability that allows slow penetration of small solutes [H

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR002368
- InterPro:   IPR006690
- InterPro:   IPR000498
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA; PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 54866; Mature: 54734

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTLGLSAGGLLLLQNTAPDLLPSLLGQSGDNSGSRRSKGTFKVLGDTFSGYSTFRNDA
CCEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHH
FQEALGEPGIRLDYADEFDQSQRAQALGQGKADFIVTTLDQFLKQKPKGKIVGLIDRTVG
HHHHHCCCCCEECCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
ADAVVLNTRQFPQLKSLINLSQLVKQGKSKQYSIVYAGDTPSEYLALVLDTKFDAFNLSD
CCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHEEEEEECCCCEECCCC
FRVIKVEDASQSWKLMQDTKENVAIAVLWEPFVSQARKQGHTVVLSSKDAPNTIVDVLVA
EEEEEEECCCCHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
SDKVIQSQPEQISAFLAAYYRRIESGISNRSQLQDQIATDGDLSAPDADTVLNGINFFTA
CCHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LEAQDWMQQDALNQRITATAAVLVLSGTLTQVPENPSQLYDPQFVSQAADNTKKLIDIVR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
ADNPELAKKLEGKSPSTQTASKPTADIKSAPSIGNLKVRGEVKFAVGAANLTSSGRQTLD
CCCHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHH
KLSKEIAEFNPDTVAVRVIGHTSKTGSASLNQSLSQQRAQVVVQYLKRLGIKQAIQAEGK
HHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCC
GFSAPLPGIPPSDARNQRTEIRLVRIN
CCCCCCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
GLTLGLSAGGLLLLQNTAPDLLPSLLGQSGDNSGSRRSKGTFKVLGDTFSGYSTFRNDA
CEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHH
FQEALGEPGIRLDYADEFDQSQRAQALGQGKADFIVTTLDQFLKQKPKGKIVGLIDRTVG
HHHHHCCCCCEECCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
ADAVVLNTRQFPQLKSLINLSQLVKQGKSKQYSIVYAGDTPSEYLALVLDTKFDAFNLSD
CCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHEEEEEECCCCEECCCC
FRVIKVEDASQSWKLMQDTKENVAIAVLWEPFVSQARKQGHTVVLSSKDAPNTIVDVLVA
EEEEEEECCCCHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
SDKVIQSQPEQISAFLAAYYRRIESGISNRSQLQDQIATDGDLSAPDADTVLNGINFFTA
CCHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LEAQDWMQQDALNQRITATAAVLVLSGTLTQVPENPSQLYDPQFVSQAADNTKKLIDIVR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
ADNPELAKKLEGKSPSTQTASKPTADIKSAPSIGNLKVRGEVKFAVGAANLTSSGRQTLD
CCCHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHH
KLSKEIAEFNPDTVAVRVIGHTSKTGSASLNQSLSQQRAQVVVQYLKRLGIKQAIQAEGK
HHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCC
GFSAPLPGIPPSDARNQRTEIRLVRIN
CCCCCCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1955870 [H]