Click here to switch to the map view.

The map label for this gene is sepF [H]

Identifier: 158338464

GI number: 158338464

Start: 5424947

End: 5425543

Strand: Direct

Name: sepF [H]

Synonym: AM1_5366

Alternate gene names: 158338464

Gene position: 5424947-5425543 (Clockwise)

Preceding gene: 158338463

Following gene: 158338465

Centisome position: 83.41

GC content: 45.73

Gene sequence:

>597_bases
GTGAGCAGTTTATTTGGCAGATTAAAGGATTTCGTCGGCATCCCAGAGTCGGATGACGATTATGATTACGTTGATGAATA
TGACGAAATTCAAAACGATGGGTATTCGGATCATTCTTATTCAGCAGAGTACTCCGAAGAGCCCGTTGAAGTGGGTGAAA
CGTTGAACAGTCAATCTGAGAAAGAACAGGGGTCTCAAGTGAATTCTAATACTAGCAATGTTGTAGGTATGCCCGGTGCC
AGCCGCTTATGGGGATCTACCACTGAGGTTTTAGTGATGGAGCCACGAGCATTCGAAGAAATGCCTCAAGTCATCCAAGC
TTTACGTGAACGTAAGTCTGTGGTTCTCAATCTAACGATGATGGAACCTATTCAGGCTCAGCGAGCCGTGGATTTTGTGG
CAGGTGCAACTTATACCATTGACGGCCACCAAGAGCGTGTTGGAGATAGCATCTTCCTATTCACCCCTAATTGTGTTCAG
GTCAGCACCCATCTGGGTGTCGTTCATGAAGCACCTACTACACCTCATTTTTCACGTCCAACAACCACTGCATCTTGGAA
AAATGATATGCAGATGAACCAGGCTATTGCCCAGTAA

Upstream 100 bases:

>100_bases
CGAATAAAATTCCTTGATGACCTTAGATCGAACTATTGCTCGGTCTTCTTGAAATCAGGTTCTTCATACCCTCAAAACCT
TCATAGATGGAGCCCAACTC

Downstream 100 bases:

>100_bases
ATAGCCAGAGATGGCCACTTTGGGTTTTTCGAAAAACTAAATACAGCAAGGAATCTCGACTAAGCTTTGGTAGACTGGTG
CATTGTTTCTGCCATCAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSSLFGRLKDFVGIPESDDDYDYVDEYDEIQNDGYSDHSYSAEYSEEPVEVGETLNSQSEKEQGSQVNSNTSNVVGMPGA
SRLWGSTTEVLVMEPRAFEEMPQVIQALRERKSVVLNLTMMEPIQAQRAVDFVAGATYTIDGHQERVGDSIFLFTPNCVQ
VSTHLGVVHEAPTTPHFSRPTTTASWKNDMQMNQAIAQ

Sequences:

>Translated_198_residues
MSSLFGRLKDFVGIPESDDDYDYVDEYDEIQNDGYSDHSYSAEYSEEPVEVGETLNSQSEKEQGSQVNSNTSNVVGMPGA
SRLWGSTTEVLVMEPRAFEEMPQVIQALRERKSVVLNLTMMEPIQAQRAVDFVAGATYTIDGHQERVGDSIFLFTPNCVQ
VSTHLGVVHEAPTTPHFSRPTTTASWKNDMQMNQAIAQ
>Mature_197_residues
SSLFGRLKDFVGIPESDDDYDYVDEYDEIQNDGYSDHSYSAEYSEEPVEVGETLNSQSEKEQGSQVNSNTSNVVGMPGAS
RLWGSTTEVLVMEPRAFEEMPQVIQALRERKSVVLNLTMMEPIQAQRAVDFVAGATYTIDGHQERVGDSIFLFTPNCVQV
STHLGVVHEAPTTPHFSRPTTTASWKNDMQMNQAIAQ

Specific function: Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of ftsZ protofilaments. Its function overlaps with ftsA [H]

COG id: COG1799

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm. Note=Localizes to the division site, in a ftsZ-dependent manner (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sepF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023052
- InterPro:   IPR007561 [H]

Pfam domain/function: PF04472 DUF552 [H]

EC number: NA

Molecular weight: Translated: 22062; Mature: 21931

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLFGRLKDFVGIPESDDDYDYVDEYDEIQNDGYSDHSYSAEYSEEPVEVGETLNSQSE
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCHHH
KEQGSQVNSNTSNVVGMPGASRLWGSTTEVLVMEPRAFEEMPQVIQALRERKSVVLNLTM
HHHCCCCCCCCCCEEECCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEHH
MEPIQAQRAVDFVAGATYTIDGHQERVGDSIFLFTPNCVQVSTHLGVVHEAPTTPHFSRP
HCHHHHHHHHHHHHCCEEEECCCHHHHCCEEEEECCCCEEHHHHHCEEECCCCCCCCCCC
TTTASWKNDMQMNQAIAQ
CCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SSLFGRLKDFVGIPESDDDYDYVDEYDEIQNDGYSDHSYSAEYSEEPVEVGETLNSQSE
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCHHH
KEQGSQVNSNTSNVVGMPGASRLWGSTTEVLVMEPRAFEEMPQVIQALRERKSVVLNLTM
HHHCCCCCCCCCCEEECCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEHH
MEPIQAQRAVDFVAGATYTIDGHQERVGDSIFLFTPNCVQVSTHLGVVHEAPTTPHFSRP
HCHHHHHHHHHHHHCCEEEECCCHHHHCCEEEEECCCCEEHHHHHCEEECCCCCCCCCCC
TTTASWKNDMQMNQAIAQ
CCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA