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The map label for this gene is yggS [C]

Identifier: 158338463

GI number: 158338463

Start: 5423762

End: 5424448

Strand: Direct

Name: yggS [C]

Synonym: AM1_5365

Alternate gene names: 158338463

Gene position: 5423762-5424448 (Clockwise)

Preceding gene: 158338462

Following gene: 158338464

Centisome position: 83.39

GC content: 48.91

Gene sequence:

>687_bases
ATGCCTTCTCCGCAGCCATTGACCCTCAAGGATCGAGTCATCTCTATTCAACGATCCTTGCCGGGATCCGTTCGCCTGAT
TGCTGTATCTAAATATATGCCGGCTGCATTGATCCGAGAGGCCTATGATGCAGGTTTACGCGACTTTGGCGAAAGCCGGG
TACAGGAAGCGATTCAGAAACAAGCAGAGCTACAAGATCTCTCAGAACTCACTTGGCATCTCATTGGTCACCTTCAAAGC
AATAAAGCCAAACTGGCGGTTCGTCACTTCGACTGGATTCACTCGGTAGATAGCTTAGCTTTAGCCCAACGCCTCAATCG
GCTGGTTGAATCAGAGCAGCATTCACCTCAGTTATGTCTTCAAGTCAAACCTCTCCCAGATCCTGACAAATTTGGTTGGA
CGTTTGCTGGTCTTAAAGCCGATCTACCTGCGTTAAAAGCCTGTGCCCATCTTCACTGGCGGGGATTAATGACGATATTA
CCGATGGGGTTATCGAGCCATGAAATCTTAAATGCTTTTCATGAAACTCAACAGTTAGCTCAAGACATTACCCAGCAGTT
CCCAGAGGATTTCACCTTACATGAGCTGTCCATGGGGATGTCTAATGATTATCAGTTGGCCGTTCAGGCTGGTGCCACAA
TGGTTCGAGTAGGCCGGCGTCTTTTCGGGGATCGGCCTCTGCCCTAG

Upstream 100 bases:

>100_bases
CCAAAGTCGCCGTAGAAAGTCGTCTCAGACTCCTTAGGCGATCGGGTACTCGCCAAGACTACGACCAACTTCAGCTTGTT
CACCAACAAACTTTTCAATA

Downstream 100 bases:

>100_bases
GCCATACTTCTATGTGGTGAGACTGATGACTAAATTCTGAACACTACAAACAAGAGGGTCTTCACAAGTTTTTCCGGGGC
GAATCACTATTCTATTCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MPSPQPLTLKDRVISIQRSLPGSVRLIAVSKYMPAALIREAYDAGLRDFGESRVQEAIQKQAELQDLSELTWHLIGHLQS
NKAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSPQLCLQVKPLPDPDKFGWTFAGLKADLPALKACAHLHWRGLMTIL
PMGLSSHEILNAFHETQQLAQDITQQFPEDFTLHELSMGMSNDYQLAVQAGATMVRVGRRLFGDRPLP

Sequences:

>Translated_228_residues
MPSPQPLTLKDRVISIQRSLPGSVRLIAVSKYMPAALIREAYDAGLRDFGESRVQEAIQKQAELQDLSELTWHLIGHLQS
NKAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSPQLCLQVKPLPDPDKFGWTFAGLKADLPALKACAHLHWRGLMTIL
PMGLSSHEILNAFHETQQLAQDITQQFPEDFTLHELSMGMSNDYQLAVQAGATMVRVGRRLFGDRPLP
>Mature_227_residues
PSPQPLTLKDRVISIQRSLPGSVRLIAVSKYMPAALIREAYDAGLRDFGESRVQEAIQKQAELQDLSELTWHLIGHLQSN
KAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSPQLCLQVKPLPDPDKFGWTFAGLKADLPALKACAHLHWRGLMTILP
MGLSSHEILNAFHETQQLAQDITQQFPEDFTLHELSMGMSNDYQLAVQAGATMVRVGRRLFGDRPLP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=222, Percent_Identity=35.1351351351351, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1789321, Length=210, Percent_Identity=39.5238095238095, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=216, Percent_Identity=33.7962962962963, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=34.7222222222222, Blast_Score=95, Evalue=7e-21,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=38.1395348837209, Blast_Score=107, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25641; Mature: 25510

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPQPLTLKDRVISIQRSLPGSVRLIAVSKYMPAALIREAYDAGLRDFGESRVQEAIQK
CCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAELQDLSELTWHLIGHLQSNKAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSPQLCL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
QVKPLPDPDKFGWTFAGLKADLPALKACAHLHWRGLMTILPMGLSSHEILNAFHETQQLA
EECCCCCCCCCCCCHHCHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QDITQQFPEDFTLHELSMGMSNDYQLAVQAGATMVRVGRRLFGDRPLP
HHHHHHCCCCCCHHHHHCCCCCCCEEHHHHCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PSPQPLTLKDRVISIQRSLPGSVRLIAVSKYMPAALIREAYDAGLRDFGESRVQEAIQK
CCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAELQDLSELTWHLIGHLQSNKAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSPQLCL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
QVKPLPDPDKFGWTFAGLKADLPALKACAHLHWRGLMTILPMGLSSHEILNAFHETQQLA
EECCCCCCCCCCCCHHCHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QDITQQFPEDFTLHELSMGMSNDYQLAVQAGATMVRVGRRLFGDRPLP
HHHHHHCCCCCCHHHHHCCCCCCCEEHHHHCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]