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The map label for this gene is yjcF [C]

Identifier: 158338433

GI number: 158338433

Start: 5396414

End: 5397073

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_5333

Alternate gene names: 158338433

Gene position: 5397073-5396414 (Counterclockwise)

Preceding gene: 158338435

Following gene: 158338431

Centisome position: 82.98

GC content: 45.3

Gene sequence:

>660_bases
TTGAAAGAGGTATTTATCTCGATACCAAATATTTCCAAGGGTTTGCTGATGATGACAAATAATAAAGAGGTTAGTCCCAT
CTCGGGGACTAATAACCTATTAAGTATTCTGTTAAGGGGATCGGAGACTTGGAATGATTGGCGGATTAAAAATCCGACTG
TCCCGATTAACTTGTTTAAAGCCAATCTCAGTAATGCACTGCTTCGAGGTGCAAATTTCGCTAGTGCAGATTTTCGCAAA
GCCAAACTGTTTCGGGCAGACTTGCGAGCAACGTGCCTATATCGGGCAGATCTGAGGGGTGCAAATTTGAGAGGTGCTAA
CCTGTTTGGTGCAAATTTGAGTGGCGCGAACCTAAGTGGCGCGAACCTCAGCAATGCCATGCTCTACTGTGCCAATCTAG
GAGGGGCTAATTTAAGAGGCACCATTTTAGACAGTGCCAACTTGATGCGAGCTAACTTCAGTCATGGAGACCTTCGCAAT
GCTATTCTCCGGAATGCCAAGCTTCAAGGCACTCATTTCGACGGGACTCGCATGTTGCGTACTGACTTGGATGAGATTAA
TCTCAGCAAGACCCAGATCGATGGCGTCCACCTAATGGATATTGATCTCAACAATTCTGCGATGGAAAATGCTGCCATTA
CAGGTTTCCTGATTAGCTGA

Upstream 100 bases:

>100_bases
AACTTAATTCATTATTTTACTTCTGAAAGTATGTATACCTTTGCCCAGTATGGATTCTAGCCTTTATCCCTGGTGAAAGA
TTTTAAAAGTGCAGGGTATA

Downstream 100 bases:

>100_bases
TATCGATTCTCGACACCTATTCGAAAAGAACATATTAACGGGGGACCATTCCTATTGGTTTGGCTACCCCGTTTGACTTT
CACTATTCCATGAGGATTCT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKEVFISIPNISKGLLMMTNNKEVSPISGTNNLLSILLRGSETWNDWRIKNPTVPINLFKANLSNALLRGANFASADFRK
AKLFRADLRATCLYRADLRGANLRGANLFGANLSGANLSGANLSNAMLYCANLGGANLRGTILDSANLMRANFSHGDLRN
AILRNAKLQGTHFDGTRMLRTDLDEINLSKTQIDGVHLMDIDLNNSAMENAAITGFLIS

Sequences:

>Translated_219_residues
MKEVFISIPNISKGLLMMTNNKEVSPISGTNNLLSILLRGSETWNDWRIKNPTVPINLFKANLSNALLRGANFASADFRK
AKLFRADLRATCLYRADLRGANLRGANLFGANLSGANLSGANLSNAMLYCANLGGANLRGTILDSANLMRANFSHGDLRN
AILRNAKLQGTHFDGTRMLRTDLDEINLSKTQIDGVHLMDIDLNNSAMENAAITGFLIS
>Mature_219_residues
MKEVFISIPNISKGLLMMTNNKEVSPISGTNNLLSILLRGSETWNDWRIKNPTVPINLFKANLSNALLRGANFASADFRK
AKLFRADLRATCLYRADLRGANLRGANLFGANLSGANLSGANLSNAMLYCANLGGANLRGTILDSANLMRANFSHGDLRN
AILRNAKLQGTHFDGTRMLRTDLDEINLSKTQIDGVHLMDIDLNNSAMENAAITGFLIS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=201, Percent_Identity=31.8407960199005, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221377802, Length=153, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 23854; Mature: 23854

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEVFISIPNISKGLLMMTNNKEVSPISGTNNLLSILLRGSETWNDWRIKNPTVPINLFK
CCEEEEECCCCCCCEEEEECCCCCCCCCCCHHHEEEEECCCCCCCCEEECCCCEEEEEEE
ANLSNALLRGANFASADFRKAKLFRADLRATCLYRADLRGANLRGANLFGANLSGANLSG
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCEEECCCCCCCCCCC
ANLSNAMLYCANLGGANLRGTILDSANLMRANFSHGDLRNAILRNAKLQGTHFDGTRMLR
CCCCCEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHCCEECCCCCCCCCCEE
TDLDEINLSKTQIDGVHLMDIDLNNSAMENAAITGFLIS
CCHHHCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKEVFISIPNISKGLLMMTNNKEVSPISGTNNLLSILLRGSETWNDWRIKNPTVPINLFK
CCEEEEECCCCCCCEEEEECCCCCCCCCCCHHHEEEEECCCCCCCCEEECCCCEEEEEEE
ANLSNALLRGANFASADFRKAKLFRADLRATCLYRADLRGANLRGANLFGANLSGANLSG
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCEEECCCCCCCCCCC
ANLSNAMLYCANLGGANLRGTILDSANLMRANFSHGDLRNAILRNAKLQGTHFDGTRMLR
CCCCCEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHCCEECCCCCCCCCCEE
TDLDEINLSKTQIDGVHLMDIDLNNSAMENAAITGFLIS
CCHHHCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA