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The map label for this gene is atpD [H]

Identifier: 158338428

GI number: 158338428

Start: 5392528

End: 5393982

Strand: Reverse

Name: atpD [H]

Synonym: AM1_5328

Alternate gene names: 158338428

Gene position: 5393982-5392528 (Counterclockwise)

Preceding gene: 158338429

Following gene: 158338427

Centisome position: 82.94

GC content: 51.07

Gene sequence:

>1455_bases
ATGGTCACCACCACGAATAAGAATACTGGTTACATTTCTCAAATTATTGGTCCTGTTTTGGACGTTGAATTCCCCAGTGG
GAAGCTGCCCAAAATTTATAATGCATTAAAAGCCAAGGGCAAAAATGCTGCCGGAGACGACGTTTCCGTGACTTGCGAAG
TTCAGCAGCTCTTGGGCGATAACCAAGTTCGCGCCGTATCCATGAGCTCCACCGATGGTTTAGTTCGGGGCATGGAAGTC
GAAGATACCGGTGCTCCCATTAGCATTCCAGTCGGTAAAGCCACCCTGGGTCGTATCTTTAACGTCTTAGGCGAGCCCGT
AGACAACCAAGGAGATGTCGGTACCGACGAAACTTTCCCCATTCACCGTCCCGCGCCTAAACTCACAGACTTGGAAACCA
AGCCTTCTGTGTTTGAAACGGGCATCAAGGTGATTGACCTTCTCACTCCCTATCGTCGAGGCGGCAAGATTGGCCTCTTC
GGTGGTGCTGGTGTGGGCAAAACCGTGATCATGATGGAATTGATCAACAACATTGCTACCAACCACGGTGGTGTGTCTGT
GTTTGGTGGTGTGGGTGAGCGAACCCGTGAAGGGAACGACCTCTACAACGAAATGATGGAGTCTGGGGTTATCAACAAGG
ACAACCTTAACGATTCCAAAATTGCCTTGTGTTACGGTCAGATGAACGAGCCCCCCGGAGCTAGAATGCGCGTGGGTCTG
TCTGCGTTGACCATGGCTGAGTATTTCCGTGATGTCAACAAGCAAGACGTGCTGTTGTTTATCGATAACATTTTCCGCTT
TGTGCAAGCCGGTTCGGAAGTATCGGCGCTGCTCGGACGGATGCCTTCTGCGGTGGGATATCAGCCGACCCTAGGTACGG
ACGTGGGTGACCTGCAAGAGCGGATTACCTCCACTACCGAAGGTTCTATTACTTCTATTCAGGCGGTGTACGTACCTGCG
GATGACTTGACTGACCCCGCTCCGGCCACTACCTTTGCTCACTTAGACGGAACCACTGTGTTGTCTCGTGGTTTGGCGTC
TAAAGGGATTTACCCCGCTGTGGATCCCTTGGATTCTGCCTCTACGATGTTGCAGCCCGGCATCGTCTCTGACGAGCACT
ATGAAACCGCTCGAGCAGTGCAGTCTACTCTGCAGCGCTATAAGGAACTACAAGACATCATCGCCATTCTCGGTTTGGAT
GAATTGTCTGAAGATGATCGCTTAGTGGTGGCCCGTGCCCGTAAGATCGAGCGTTTCCTGTCTCAGCCCTTCTTCGTGGC
TGAGGTCTTCACTGGTTCCCCCGGTAAGTATGTCTCTCTAGAAAAGACCATCGCTGGTTTCCAAAAGATTCTCGGTGGTG
AGCTAGATGATTTACCAGAGCAAGCGTTCTATCTGGTGGGTGATATTGATGAAGCCATTGCCAAAGCTGAAAAAATGAAA
GCCGAAGGCAAGTAA

Upstream 100 bases:

>100_bases
TGAGTCCCTTAAATGATAGGTTTAGAAATGGCGAAATCATACGTCTGAGCTGCGCGTAAAAGCAGTTATAACAGTCATCA
CAACTAGAGTAGGCGTGAGC

Downstream 100 bases:

>100_bases
GGAGGCATTATGTCACTAACAGTACGAGTCATTGCTGCCGACAAAACGGTTTGGGACTCTGCGGCTGAAGAAGTCATTCT
GCCCAGCACCACTGGCCAGC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MVTTTNKNTGYISQIIGPVLDVEFPSGKLPKIYNALKAKGKNAAGDDVSVTCEVQQLLGDNQVRAVSMSSTDGLVRGMEV
EDTGAPISIPVGKATLGRIFNVLGEPVDNQGDVGTDETFPIHRPAPKLTDLETKPSVFETGIKVIDLLTPYRRGGKIGLF
GGAGVGKTVIMMELINNIATNHGGVSVFGGVGERTREGNDLYNEMMESGVINKDNLNDSKIALCYGQMNEPPGARMRVGL
SALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTTEGSITSIQAVYVPA
DDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLDSASTMLQPGIVSDEHYETARAVQSTLQRYKELQDIIAILGLD
ELSEDDRLVVARARKIERFLSQPFFVAEVFTGSPGKYVSLEKTIAGFQKILGGELDDLPEQAFYLVGDIDEAIAKAEKMK
AEGK

Sequences:

>Translated_484_residues
MVTTTNKNTGYISQIIGPVLDVEFPSGKLPKIYNALKAKGKNAAGDDVSVTCEVQQLLGDNQVRAVSMSSTDGLVRGMEV
EDTGAPISIPVGKATLGRIFNVLGEPVDNQGDVGTDETFPIHRPAPKLTDLETKPSVFETGIKVIDLLTPYRRGGKIGLF
GGAGVGKTVIMMELINNIATNHGGVSVFGGVGERTREGNDLYNEMMESGVINKDNLNDSKIALCYGQMNEPPGARMRVGL
SALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTTEGSITSIQAVYVPA
DDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLDSASTMLQPGIVSDEHYETARAVQSTLQRYKELQDIIAILGLD
ELSEDDRLVVARARKIERFLSQPFFVAEVFTGSPGKYVSLEKTIAGFQKILGGELDDLPEQAFYLVGDIDEAIAKAEKMK
AEGK
>Mature_484_residues
MVTTTNKNTGYISQIIGPVLDVEFPSGKLPKIYNALKAKGKNAAGDDVSVTCEVQQLLGDNQVRAVSMSSTDGLVRGMEV
EDTGAPISIPVGKATLGRIFNVLGEPVDNQGDVGTDETFPIHRPAPKLTDLETKPSVFETGIKVIDLLTPYRRGGKIGLF
GGAGVGKTVIMMELINNIATNHGGVSVFGGVGERTREGNDLYNEMMESGVINKDNLNDSKIALCYGQMNEPPGARMRVGL
SALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTTEGSITSIQAVYVPA
DDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLDSASTMLQPGIVSDEHYETARAVQSTLQRYKELQDIIAILGLD
ELSEDDRLVVARARKIERFLSQPFFVAEVFTGSPGKYVSLEKTIAGFQKILGGELDDLPEQAFYLVGDIDEAIAKAEKMK
AEGK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=474, Percent_Identity=66.6666666666667, Blast_Score=639, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=376, Percent_Identity=27.1276595744681, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI19913426, Length=380, Percent_Identity=25.7894736842105, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI19913424, Length=325, Percent_Identity=27.3846153846154, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI50345984, Length=287, Percent_Identity=25.7839721254355, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI4757810, Length=287, Percent_Identity=25.7839721254355, Blast_Score=83, Evalue=5e-16,
Organism=Escherichia coli, GI1790170, Length=471, Percent_Identity=66.2420382165605, Blast_Score=630, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=405, Percent_Identity=28.3950617283951, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1790172, Length=351, Percent_Identity=24.5014245014245, Blast_Score=98, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25144756, Length=479, Percent_Identity=64.0918580375783, Blast_Score=615, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17510931, Length=365, Percent_Identity=26.5753424657534, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=447, Percent_Identity=24.6085011185682, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=325, Percent_Identity=27.3846153846154, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=287, Percent_Identity=25.4355400696864, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI71988063, Length=287, Percent_Identity=25.4355400696864, Blast_Score=85, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71988074, Length=265, Percent_Identity=24.1509433962264, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322581, Length=465, Percent_Identity=64.7311827956989, Blast_Score=612, Evalue=1e-176,
Organism=Saccharomyces cerevisiae, GI6319603, Length=440, Percent_Identity=26.1363636363636, Blast_Score=114, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6319370, Length=300, Percent_Identity=25.6666666666667, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320016, Length=219, Percent_Identity=26.027397260274, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI28574560, Length=472, Percent_Identity=66.1016949152542, Blast_Score=625, Evalue=1e-179,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=65.1898734177215, Blast_Score=621, Evalue=1e-178,
Organism=Drosophila melanogaster, GI24583992, Length=325, Percent_Identity=27.6923076923077, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI281361666, Length=400, Percent_Identity=26.25, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24646341, Length=400, Percent_Identity=26.25, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI17136796, Length=400, Percent_Identity=26.25, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=26.271186440678, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=26.271186440678, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=26.271186440678, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI20129479, Length=337, Percent_Identity=27.0029673590504, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24658560, Length=287, Percent_Identity=24.7386759581882, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=48.4536082474227, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51990; Mature: 51990

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTTNKNTGYISQIIGPVLDVEFPSGKLPKIYNALKAKGKNAAGDDVSVTCEVQQLLGD
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCC
NQVRAVSMSSTDGLVRGMEVEDTGAPISIPVGKATLGRIFNVLGEPVDNQGDVGTDETFP
CCEEEEEECCCCCHHCCCEECCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
IHRPAPKLTDLETKPSVFETGIKVIDLLTPYRRGGKIGLFGGAGVGKTVIMMELINNIAT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
NHGGVSVFGGVGERTREGNDLYNEMMESGVINKDNLNDSKIALCYGQMNEPPGARMRVGL
CCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEHHH
SALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RITSTTEGSITSIQAVYVPADDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLDSA
HHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCH
STMLQPGIVSDEHYETARAVQSTLQRYKELQDIIAILGLDELSEDDRLVVARARKIERFL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHH
SQPFFVAEVFTGSPGKYVSLEKTIAGFQKILGGELDDLPEQAFYLVGDIDEAIAKAEKMK
CCCEEEEEEEECCCCCEEEHHHHHHHHHHHHCCCHHCCCHHHEEEECCHHHHHHHHHHHH
AEGK
CCCC
>Mature Secondary Structure
MVTTTNKNTGYISQIIGPVLDVEFPSGKLPKIYNALKAKGKNAAGDDVSVTCEVQQLLGD
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCC
NQVRAVSMSSTDGLVRGMEVEDTGAPISIPVGKATLGRIFNVLGEPVDNQGDVGTDETFP
CCEEEEEECCCCCHHCCCEECCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
IHRPAPKLTDLETKPSVFETGIKVIDLLTPYRRGGKIGLFGGAGVGKTVIMMELINNIAT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
NHGGVSVFGGVGERTREGNDLYNEMMESGVINKDNLNDSKIALCYGQMNEPPGARMRVGL
CCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEHHH
SALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RITSTTEGSITSIQAVYVPADDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLDSA
HHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCH
STMLQPGIVSDEHYETARAVQSTLQRYKELQDIIAILGLDELSEDDRLVVARARKIERFL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHH
SQPFFVAEVFTGSPGKYVSLEKTIAGFQKILGGELDDLPEQAFYLVGDIDEAIAKAEKMK
CCCEEEEEEEECCCCCEEEHHHHHHHHHHHHCCCHHCCCHHHEEEECCHHHHHHHHHHHH
AEGK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA