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The map label for this gene is atpC

Identifier: 158338427

GI number: 158338427

Start: 5392102

End: 5392518

Strand: Reverse

Name: atpC

Synonym: AM1_5327

Alternate gene names: 158338427

Gene position: 5392518-5392102 (Counterclockwise)

Preceding gene: 158338428

Following gene: 158338426

Centisome position: 82.91

GC content: 52.76

Gene sequence:

>417_bases
ATGTCACTAACAGTACGAGTCATTGCTGCCGACAAAACGGTTTGGGACTCTGCGGCTGAAGAAGTCATTCTGCCCAGCAC
CACTGGCCAGCTCGGTATTTTATCCGGTCACGCACCTTTACTCTCGGCGCTTGATGTCGGCGTAATGCGGGTTCGACCGG
GTAAAGACTGGGTTTCCATCGCCCTGATGGGTGGCTTTGTTGAAGTTGAAAACGATGAAGTGGTTATCTTGGTGAACGGC
GCTGAGCGCGGTGACACCATTGATCGGGAAGAAGCCCGTTCCACTCTATCTGCCGCCCAAGCTCGATTGGATCAATCAGA
ACAAAGCGAAGATAAGCAAGAGCGTTATGAAGCCCAGCGTGACTTCAAACGCGCCCGTGCTCGACTTCAAGCCTCTGGCG
AAGTCGTCAATATCTAA

Upstream 100 bases:

>100_bases
AGATGATTTACCAGAGCAAGCGTTCTATCTGGTGGGTGATATTGATGAAGCCATTGCCAAAGCTGAAAAAATGAAAGCCG
AAGGCAAGTAAGGAGGCATT

Downstream 100 bases:

>100_bases
GTTTCATTGGTTGTTGACTGTTCTGAGCCTTGCACTAGCAGGGCTCAGTTCTTTTTTTATGGAATTTAACCAACGATGGT
CAGCTTTCGTCTATAACAAG

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSLTVRVIAADKTVWDSAAEEVILPSTTGQLGILSGHAPLLSALDVGVMRVRPGKDWVSIALMGGFVEVENDEVVILVNG
AERGDTIDREEARSTLSAAQARLDQSEQSEDKQERYEAQRDFKRARARLQASGEVVNI

Sequences:

>Translated_138_residues
MSLTVRVIAADKTVWDSAAEEVILPSTTGQLGILSGHAPLLSALDVGVMRVRPGKDWVSIALMGGFVEVENDEVVILVNG
AERGDTIDREEARSTLSAAQARLDQSEQSEDKQERYEAQRDFKRARARLQASGEVVNI
>Mature_137_residues
SLTVRVIAADKTVWDSAAEEVILPSTTGQLGILSGHAPLLSALDVGVMRVRPGKDWVSIALMGGFVEVENDEVVILVNGA
ERGDTIDREEARSTLSAAQARLDQSEQSEDKQERYEAQRDFKRARARLQASGEVVNI

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:
GO:0015986: Alternate F1F0 ATPase, F1 subunit epsilon
GO:0045261: Alternate F1F0 ATPase, F1 subunit epsilon
GO:0046933: Alternate F1F0 ATPase, F1 subunit epsilon
GO:0046961: Alternate F1F0 ATPase, F1 subunit epsilon

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_ACAM1 (B0CAT4)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001519604.1
- ProteinModelPortal:   B0CAT4
- SMR:   B0CAT4
- GeneID:   5684119
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_5327
- HOGENOM:   HBG663981
- OMA:   NNAEIGS
- ProtClustDB:   PRK00571
- BioCyc:   AMAR329726:AM1_5327-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020547
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF00401 ATP-synt_DE; PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 15035; Mature: 14904

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTVRVIAADKTVWDSAAEEVILPSTTGQLGILSGHAPLLSALDVGVMRVRPGKDWVSI
CCEEEEEEECCCHHHHHCCCCEECCCCCCCEEEEECCCHHHHHHCCCEEEEECCCCEEEE
ALMGGFVEVENDEVVILVNGAERGDTIDREEARSTLSAAQARLDQSEQSEDKQERYEAQR
EEECCEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DFKRARARLQASGEVVNI
HHHHHHHHHHCCCCEECC
>Mature Secondary Structure 
SLTVRVIAADKTVWDSAAEEVILPSTTGQLGILSGHAPLLSALDVGVMRVRPGKDWVSI
CEEEEEEECCCHHHHHCCCCEECCCCCCCEEEEECCCHHHHHHCCCEEEEECCCCEEEE
ALMGGFVEVENDEVVILVNGAERGDTIDREEARSTLSAAQARLDQSEQSEDKQERYEAQR
EEECCEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DFKRARARLQASGEVVNI
HHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA