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The map label for this gene is yjcF [C]

Identifier: 158338333

GI number: 158338333

Start: 5296266

End: 5296760

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_5229

Alternate gene names: 158338333

Gene position: 5296760-5296266 (Counterclockwise)

Preceding gene: 158338338

Following gene: 158338332

Centisome position: 81.44

GC content: 51.92

Gene sequence:

>495_bases
ATGAAACTCAGTCGAGACGAATTAAGCCGTCGCTACGCAGCCGGAGAACGGCGATTTGCCGGAGCCGATTTCACGGCCCT
GGATCTGCATCAGCTGGATCTCAGCCAAGCCGATTTTAGTGGGGCTGAGTTCTGTGGCTGTAACTTGAGTGAGGTTAATC
TGAGCCAAGCTGATTTGAGTGGTGCGGATCTGAGCGATGCCAACCTAGCCCAAACCGATCTGCACAAGGCCGATTTGAGT
GGGGTGGACTTAAGTGCCGCTAATCTCACAAAGGCCAATCTCAAGGATGCCGATTTGAGCGGCGTGGATTTGAGTGAAGC
CAATCTGACCGATGCAGATCTCCAGAATGCTGATCTGAGCGGCGTGGATCTAAGTGAATCCAATCTGCAAGGGGCCAACT
TACGAGGGGCGGATATGAGTGGGGCTGATGTCAGCTATAGCCGCTATTGCCAAACCATTTTTCCCAGTGGAAAAATTCGC
AATGACCATTGTTGA

Upstream 100 bases:

>100_bases
AGGCTTGTGTTCGATTCAATGTGACTATTTGCTCTTTTCCCCATTTTACAGCGGGAAGGGAGTAAGCTATGGTTGAAACG
TCAGCAACGCCAGTAAACCT

Downstream 100 bases:

>100_bases
GGGGCTATCCCGATAGCCTACGCTGGTGTAACAGTTCGACGTCAGCACACCATTCCAAAAAGATCAGCATGATTTCAGAC
TCTTATCATGTCACCCTTGA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MKLSRDELSRRYAAGERRFAGADFTALDLHQLDLSQADFSGAEFCGCNLSEVNLSQADLSGADLSDANLAQTDLHKADLS
GVDLSAANLTKANLKDADLSGVDLSEANLTDADLQNADLSGVDLSESNLQGANLRGADMSGADVSYSRYCQTIFPSGKIR
NDHC

Sequences:

>Translated_164_residues
MKLSRDELSRRYAAGERRFAGADFTALDLHQLDLSQADFSGAEFCGCNLSEVNLSQADLSGADLSDANLAQTDLHKADLS
GVDLSAANLTKANLKDADLSGVDLSEANLTDADLQNADLSGVDLSESNLQGANLRGADMSGADVSYSRYCQTIFPSGKIR
NDHC
>Mature_164_residues
MKLSRDELSRRYAAGERRFAGADFTALDLHQLDLSQADFSGAEFCGCNLSEVNLSQADLSGADLSDANLAQTDLHKADLS
GVDLSAANLTKANLKDADLSGVDLSEANLTDADLQNADLSGVDLSESNLQGANLRGADMSGADVSYSRYCQTIFPSGKIR
NDHC

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=175, Percent_Identity=33.7142857142857, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221377802, Length=160, Percent_Identity=33.125, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 17393; Mature: 17393

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSRDELSRRYAAGERRFAGADFTALDLHQLDLSQADFSGAEFCGCNLSEVNLSQADLS
CCCCHHHHHHHHHCCCCEECCCCCEEEEHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
GADLSDANLAQTDLHKADLSGVDLSAANLTKANLKDADLSGVDLSEANLTDADLQNADLS
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVDLSESNLQGANLRGADMSGADVSYSRYCQTIFPSGKIRNDHC
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKLSRDELSRRYAAGERRFAGADFTALDLHQLDLSQADFSGAEFCGCNLSEVNLSQADLS
CCCCHHHHHHHHHCCCCEECCCCCEEEEHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
GADLSDANLAQTDLHKADLSGVDLSAANLTKANLKDADLSGVDLSEANLTDADLQNADLS
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVDLSESNLQGANLRGADMSGADVSYSRYCQTIFPSGKIRNDHC
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA