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The map label for this gene is psb29

Identifier: 158338004

GI number: 158338004

Start: 4940012

End: 4940755

Strand: Reverse

Name: psb29

Synonym: AM1_4891

Alternate gene names: 158338004

Gene position: 4940755-4940012 (Counterclockwise)

Preceding gene: 158338006

Following gene: 158338003

Centisome position: 75.97

GC content: 45.7

Gene sequence:

>744_bases
GTGAATAACCTGCGTACTGTTTCTGACACAAAACGAGCTTTTTACTCTATTCATACCCGTCCCGTAAATTCAGTGTATCG
AAGGGTGGTAGAGGAGCTCATGGTAGAGATGCATCTACTGCGGGTGAATGAAGATTTTCGCTACGATCCTATTTTTGCAT
TGGGCGTGACTACATCCTTTGACCGGTTTATGGATGGGTATCAGCCTGAGAATGATAAAGATGCAATCTTTAGCGCCATC
TGTAAGGCCCAGGAAGCCGATCCCGTCCAAATGAAGAAGGACGGCCAGCGTTTAACCGAATTGGCCCAGTCGAAATCTGC
CCAGGAAATGTTGGATTGGATTACCCAAGCGGCAAACTCCGGGGGCGATGAGCTGCAATGGCAGCTACGAAATATTGCTC
AAAACCCTAAGTTTAAATACAGTCGTCTATTTGCGATCGGGTTGTTTACCCTTTTAGAACTCAGTGAAGGGAACATCACC
CAAGACGAAGAATCTTTGGCAGAGTTTTTACCTAATATTTGCACAGTGCTCAATATCTCTGAGAGTAAGCTGCAAAAGGA
TCTAGAAATCTATCGAGGTAACTTGGACAAAATTGCCCAAGTTCGTCAGGCCATGGATGATATTTTGGAAGCCCAGAAAA
AACGTAGAGAAGCAGACCAGGCTAAAAAAGAGGGCTCTGATGATACGCCTACTACCGAGGCGAGTACCCCAGATTCTGAA
CCCACCTCTGAAGTCTCTAGTTAG

Upstream 100 bases:

>100_bases
CTGAAGTTTTATTATTCTAAGACCTCATGGTTTTCTTCTCACCTAGTGACCCACCGATTTCGCTGAGTTAATATTTGTAG
TTTTTCTTTTTTCCCTTATT

Downstream 100 bases:

>100_bases
TTTGCTGTGTAAAGGAGTCATGCCATGACCTCATCTGTCAGCCTTACTCCGGCTCATAGCTATGAGCAACCTTCCTTAAA
GGAATCCCTAGAATCGGTGC

Product: Thf1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNNLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAI
CKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNPKFKYSRLFAIGLFTLLELSEGNIT
QDEESLAEFLPNICTVLNISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRREADQAKKEGSDDTPTTEASTPDSE
PTSEVSS

Sequences:

>Translated_247_residues
MNNLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAI
CKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNPKFKYSRLFAIGLFTLLELSEGNIT
QDEESLAEFLPNICTVLNISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRREADQAKKEGSDDTPTTEASTPDSE
PTSEVSS
>Mature_247_residues
MNNLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAI
CKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNPKFKYSRLFAIGLFTLLELSEGNIT
QDEESLAEFLPNICTVLNISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRREADQAKKEGSDDTPTTEASTPDSE
PTSEVSS

Specific function: May be involved in photosynthetic membrane biogenesis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the THF1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): THF1_ACAM1 (B0C3M8)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001519180.1
- GeneID:   5683691
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_4891
- HOGENOM:   HBG634536
- OMA:   RTVSDTK
- ProtClustDB:   PRK13266
- BioCyc:   AMAR329726:AM1_4891-MONOMER
- HAMAP:   MF_01843
- InterPro:   IPR017499
- TIGRFAMs:   TIGR03060

Pfam domain/function: PF11264 ThylakoidFormat

EC number: NA

Molecular weight: Translated: 28127; Mature: 28127

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSF
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHH
DRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANS
HHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
GGDELQWQLRNIAQNPKFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNIS
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
ESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRREADQAKKEGSDDTPTTEASTPDSE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PTSEVSS
CCHHCCC
>Mature Secondary Structure
MNNLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSF
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHH
DRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANS
HHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
GGDELQWQLRNIAQNPKFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNIS
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
ESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRREADQAKKEGSDDTPTTEASTPDSE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PTSEVSS
CCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA