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The map label for this gene is hupR1 [H]

Identifier: 158337907

GI number: 158337907

Start: 4832493

End: 4832888

Strand: Reverse

Name: hupR1 [H]

Synonym: AM1_4794

Alternate gene names: 158337907

Gene position: 4832888-4832493 (Counterclockwise)

Preceding gene: 158337908

Following gene: 158337906

Centisome position: 74.31

GC content: 44.44

Gene sequence:

>396_bases
ATGGTTAAGCCCGTCGTTTTATGTGTAGATGATGAAAAAGTTATTTTAGACAGTCTCAAAATACAGATTAAAAAAGAGCT
GAGTGACCTCTGCAATGTAGAAGCAGCCATCAATGCCAACGAAGCATTAGAAATTGTGGAGGAGCTGCAGGAAGATGGCG
TTGAGGTAGTTTTGGTGCTGTGTGATTGGCTCATGCCAGGGATGAAGGGAGACGAATTTTTCGTCAAACTTCATCAAGAT
CATCCCAATATCATCAAAATCATGCTCTCTGGGCAGGCGGATCACTCAGCGATTGAACGGGCCAAGGAAGAGGCCGATCT
CCATCGGTTTATCCATAAGCCCTGGCGCAAAAGCGAATTAATTGAACTGCTGAAGTCAAATCTGGAAGCGCTATGA

Upstream 100 bases:

>100_bases
TTCCGTGGTATCTGAACCTGGGAAAACCCAATTTACCGTGTCTATCCCCCTGACTTAGGGCAGGAGACAATTTGAACTCG
ACTAGCAATGGATCAATGTG

Downstream 100 bases:

>100_bases
GTAAGCCTTTTATCCTCTGTGTAGATGACGAATCTACTGTTCTAGAGTCCCTCAAAATCGAATTACGGAAATCCATTGGC
CAGGACTGCGCCATCGAAAC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MVKPVVLCVDDEKVILDSLKIQIKKELSDLCNVEAAINANEALEIVEELQEDGVEVVLVLCDWLMPGMKGDEFFVKLHQD
HPNIIKIMLSGQADHSAIERAKEEADLHRFIHKPWRKSELIELLKSNLEAL

Sequences:

>Translated_131_residues
MVKPVVLCVDDEKVILDSLKIQIKKELSDLCNVEAAINANEALEIVEELQEDGVEVVLVLCDWLMPGMKGDEFFVKLHQD
HPNIIKIMLSGQADHSAIERAKEEADLHRFIHKPWRKSELIELLKSNLEAL
>Mature_131_residues
MVKPVVLCVDDEKVILDSLKIQIKKELSDLCNVEAAINANEALEIVEELQEDGVEVVLVLCDWLMPGMKGDEFFVKLHQD
HPNIIKIMLSGQADHSAIERAKEEADLHRFIHKPWRKSELIELLKSNLEAL

Specific function: Probable member of the two-component regulatory system involved in the regulation of the [NiFe] hydrogenase activity. HupR1 is probably phosphorylated by the sensory component and then acts in conjunction with sigma-54 as a transcriptional activator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 14909; Mature: 14909

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPVVLCVDDEKVILDSLKIQIKKELSDLCNVEAAINANEALEIVEELQEDGVEVVLVL
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCHHHHHHH
CDWLMPGMKGDEFFVKLHQDHPNIIKIMLSGQADHSAIERAKEEADLHRFIHKPWRKSEL
HHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
IELLKSNLEAL
HHHHHHHHCCC
>Mature Secondary Structure
MVKPVVLCVDDEKVILDSLKIQIKKELSDLCNVEAAINANEALEIVEELQEDGVEVVLVL
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCHHHHHHH
CDWLMPGMKGDEFFVKLHQDHPNIIKIMLSGQADHSAIERAKEEADLHRFIHKPWRKSEL
HHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
IELLKSNLEAL
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1885559; 8497190; 2007559 [H]