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The map label for this gene is rtcB [H]

Identifier: 158337868

GI number: 158337868

Start: 4794622

End: 4795806

Strand: Reverse

Name: rtcB [H]

Synonym: AM1_4754

Alternate gene names: 158337868

Gene position: 4795806-4794622 (Counterclockwise)

Preceding gene: 158337870

Following gene: 158337867

Centisome position: 73.74

GC content: 52.49

Gene sequence:

>1185_bases
ATGTCTTACCAACAACTGAAGCTGTCAGCACCAAAGTCTGTCCTGTCTTGGGCAAATCATGATTTGGGGCCAGCAGAAAC
CCAAATGGCAAAGAATGTGGCTTCCCTACCGTTTGTCTATAAGCATGTGGCCTTGATGCCAGACGTGCATCTGGGCAAAG
GGGCCTTGGTGGGCTCGGTTGTCGCTACGAAGGATGCGGTGATTCCAGCAGCCGTTGGCGTTGATATTGGTTGTGGCATG
GGAGCGATGCAAACGCCTTTCACCGCCGATCAACTGGATAGCAAAGTCCTTAAGCAAATCCGCTTAGATATTGAGGCTAC
GATTCCGGTGGGCTTCAACCAAAACGACGAAGCGGATAAGTCGGTCTACAACTGGCAGCGCTGGCAGGACTTTAAGCATC
TCCATACCGGGGTACAGCACCTGGAAAAGAAAGCCTTGCGCCAAATGGGCTCTTTGGGAGGGGGCAACCACTTTATTGAA
GTCTGCGTGGATTCTGATGATCAGGTGTGGCTAATGCTGCATTCCGGCTCCCGCAATATCGGCAATATGTTGGCTCAAAA
CCATATCAGAACGGCAAAGGAGCTAGCCAAGCTGGCTGAGATGAAATTGCCGGATCTAGATTTGGCCTACTTTGTAGCGG
GCACCTCTGAGTTTGCTGCCTATTGGCGGGATTTGCAGTGGGCCCAGGACTACGCCCGCTATAACCGAGAGGTGATGATG
GCCCGCTTTAAGCGGATTGTGGAGAAGCATTTGGCTGGGGGCAAACCCACCAAGCCGGTGCTATCCGTTAACTGTCATCA
CAACTATGCGGAGCAAGAGATGCACTATGGAGAGCAGGTCTATGTCACCCGTAAAGGTGCGGTCCGGGCTCGCCAAGAAG
ACTACGGCATCATTCCCGGTTCCATGGGCGCGAAGTCCTATATTGTCAAAGGCAAGGGGAATCTGGAAAGCTATTGCTCT
TGTAGCCACGGAGCGGGGCGGACCATGTCTCGAACCAAGGCGAAAAAGCACTTTACCCTGGATGATTTGATTGAACAAAC
CCAAGGGGTGGAGTGCCGCAAGGACAAGGGAATTCTGGATGAAATTCCAGGGGCCTACAAGCCGATTGAAGAAGTGATGG
CGAATCAGTCTGACTTGGTAGAGGTGGTCGCCACCCTGAAGCAAGTGGTCTGCGTTAAAGGATAG

Upstream 100 bases:

>100_bases
CTTTGTAGTATATGTACTACAGATATTTCTACGACTCGTCTCGATTTGAGCTGGGGAATAGAGCTGTTAATCTTTGTGAT
CTCTGGATGGGGGTGAAACC

Downstream 100 bases:

>100_bases
TGGGGGATTTGGGGGGATCTCCCACCCACTGCCTTTGGCCGCTATGATGGAGGCTATTATGGCCATTGTCTCCTCTAAGC
AATCTCCTCAACCGGATGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSYQQLKLSAPKSVLSWANHDLGPAETQMAKNVASLPFVYKHVALMPDVHLGKGALVGSVVATKDAVIPAAVGVDIGCGM
GAMQTPFTADQLDSKVLKQIRLDIEATIPVGFNQNDEADKSVYNWQRWQDFKHLHTGVQHLEKKALRQMGSLGGGNHFIE
VCVDSDDQVWLMLHSGSRNIGNMLAQNHIRTAKELAKLAEMKLPDLDLAYFVAGTSEFAAYWRDLQWAQDYARYNREVMM
ARFKRIVEKHLAGGKPTKPVLSVNCHHNYAEQEMHYGEQVYVTRKGAVRARQEDYGIIPGSMGAKSYIVKGKGNLESYCS
CSHGAGRTMSRTKAKKHFTLDDLIEQTQGVECRKDKGILDEIPGAYKPIEEVMANQSDLVEVVATLKQVVCVKG

Sequences:

>Translated_394_residues
MSYQQLKLSAPKSVLSWANHDLGPAETQMAKNVASLPFVYKHVALMPDVHLGKGALVGSVVATKDAVIPAAVGVDIGCGM
GAMQTPFTADQLDSKVLKQIRLDIEATIPVGFNQNDEADKSVYNWQRWQDFKHLHTGVQHLEKKALRQMGSLGGGNHFIE
VCVDSDDQVWLMLHSGSRNIGNMLAQNHIRTAKELAKLAEMKLPDLDLAYFVAGTSEFAAYWRDLQWAQDYARYNREVMM
ARFKRIVEKHLAGGKPTKPVLSVNCHHNYAEQEMHYGEQVYVTRKGAVRARQEDYGIIPGSMGAKSYIVKGKGNLESYCS
CSHGAGRTMSRTKAKKHFTLDDLIEQTQGVECRKDKGILDEIPGAYKPIEEVMANQSDLVEVVATLKQVVCVKG
>Mature_393_residues
SYQQLKLSAPKSVLSWANHDLGPAETQMAKNVASLPFVYKHVALMPDVHLGKGALVGSVVATKDAVIPAAVGVDIGCGMG
AMQTPFTADQLDSKVLKQIRLDIEATIPVGFNQNDEADKSVYNWQRWQDFKHLHTGVQHLEKKALRQMGSLGGGNHFIEV
CVDSDDQVWLMLHSGSRNIGNMLAQNHIRTAKELAKLAEMKLPDLDLAYFVAGTSEFAAYWRDLQWAQDYARYNREVMMA
RFKRIVEKHLAGGKPTKPVLSVNCHHNYAEQEMHYGEQVYVTRKGAVRARQEDYGIIPGSMGAKSYIVKGKGNLESYCSC
SHGAGRTMSRTKAKKHFTLDDLIEQTQGVECRKDKGILDEIPGAYKPIEEVMANQSDLVEVVATLKQVVCVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=444, Percent_Identity=26.8018018018018, Blast_Score=121, Evalue=1e-27,
Organism=Escherichia coli, GI2367224, Length=387, Percent_Identity=50.9043927648579, Blast_Score=380, Evalue=1e-106,
Organism=Caenorhabditis elegans, GI17506665, Length=447, Percent_Identity=27.0693512304251, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24585217, Length=421, Percent_Identity=26.1282660332542, Blast_Score=109, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43704; Mature: 43572

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYQQLKLSAPKSVLSWANHDLGPAETQMAKNVASLPFVYKHVALMPDVHLGKGALVGSV
CCCCHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHH
VATKDAVIPAAVGVDIGCGMGAMQTPFTADQLDSKVLKQIRLDIEATIPVGFNQNDEADK
HHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHH
SVYNWQRWQDFKHLHTGVQHLEKKALRQMGSLGGGNHFIEVCVDSDDQVWLMLHSGSRNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCH
GNMLAQNHIRTAKELAKLAEMKLPDLDLAYFVAGTSEFAAYWRDLQWAQDYARYNREVMM
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARFKRIVEKHLAGGKPTKPVLSVNCHHNYAEQEMHYGEQVYVTRKGAVRARQEDYGIIPG
HHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCEEEEEECCCHHCCCCCCCCCCC
SMGAKSYIVKGKGNLESYCSCSHGAGRTMSRTKAKKHFTLDDLIEQTQGVECRKDKGILD
CCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHH
EIPGAYKPIEEVMANQSDLVEVVATLKQVVCVKG
HCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYQQLKLSAPKSVLSWANHDLGPAETQMAKNVASLPFVYKHVALMPDVHLGKGALVGSV
CCCHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHH
VATKDAVIPAAVGVDIGCGMGAMQTPFTADQLDSKVLKQIRLDIEATIPVGFNQNDEADK
HHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHH
SVYNWQRWQDFKHLHTGVQHLEKKALRQMGSLGGGNHFIEVCVDSDDQVWLMLHSGSRNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCH
GNMLAQNHIRTAKELAKLAEMKLPDLDLAYFVAGTSEFAAYWRDLQWAQDYARYNREVMM
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARFKRIVEKHLAGGKPTKPVLSVNCHHNYAEQEMHYGEQVYVTRKGAVRARQEDYGIIPG
HHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCEEEEEECCCHHCCCCCCCCCCC
SMGAKSYIVKGKGNLESYCSCSHGAGRTMSRTKAKKHFTLDDLIEQTQGVECRKDKGILD
CCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHH
EIPGAYKPIEEVMANQSDLVEVVATLKQVVCVKG
HCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]