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The map label for this gene is ctpA [H]

Identifier: 158337783

GI number: 158337783

Start: 4701176

End: 4702408

Strand: Direct

Name: ctpA [H]

Synonym: AM1_4667

Alternate gene names: 158337783

Gene position: 4701176-4702408 (Clockwise)

Preceding gene: 158337776

Following gene: 158337784

Centisome position: 72.28

GC content: 49.23

Gene sequence:

>1233_bases
ATGATTAAACGTATTGTTAGCTATATATTTATTCTGCAATTTGCCCTCTCCCTAGCGATTGCCCCTCCTGCCATCGCCTT
AACTGAAGAGCAATTGCTCTATAACGAAGCTTGGCGTCTAGTGGATCAAGCTTATGTGGATGACTCCTTCAACCATCAGG
ATTGGCGGACGGTGCGTCAAAAGGCATTAACCACCCAAATGCCGGATCGGGAGTCTACCTACAAGGCTATCCGCGACATG
CTAGATAGCCTTGGCGATCCGTTTACTCGCCTGTTACAGCCAAAGCAATACCAGAGCTTAAAGACCAGTACGTCTGGTGA
ACTCACTGGGGTTGGCTTACAAATCATTCAAAATGAAGAATCAGGCTATTTAGAAGTACTGGCTCCTATTGAAGGATCAC
CGGCTGCTAGTGCAGGGGTGCAAGCGGCAGATCAAATTCTCAAAATTGACAATATTCCAACTACGGACCTGTCCCTAGAT
GAAGCGGCTGAGCGCATGCGTGGTCCCATCGGGTCAACGGTAAAGTTAAAGGTGGAACGTCCTGATCAGGGCGTATTGCT
GTTTCCCATCAAACGCGATCGCATTGCCATTAATCCGGTATTTGCTGAATTGCGTCCTCAACCCAACGGTCAAGATATTG
GTTTTATCCGTCTACGCCAATTCAACGCCAATGCTACCCAAGAAATGCAGGCAGCGATTACCCGCCTTGAAGCTGAGGGG
GCTGAAGGCTACATTCTAGACCTACGGAATAATCCGGGAGGCCTTTTGCAAGCTGGGGTTGAGATTGCCCAGATGTGGCT
CGACCCCAGCCCCATCGTCTACACCGTTGATCGCCAAGGGATTCGCAATAGCTTTGACTCTAAAGCCGGTTCCCTAACGG
ACGCCCCTCTGATTGTTTTAGTCAATCGGGGTAGTGCCAGCGCCAGTGAAATCTTGGCAGGGGCTTTGCAAGATAATGGT
CGTGCCCAATTAGTAGGTGAGCAAACCTTTGGCAAAGGTTCGATTCAATCTCTGTTTAATCTGTCGGATGGCTCCGGTCT
AGCGATTACCATCGCAAAATATGAAACTCCTAGTCATCGCAACATTAATAAGGTGGGGATTAAACCCGATAAAATCGTTG
CCCTCAAAACCCTGCGAAGTGACCAAGTGGGGACGGATGCGGATACTCAATATCAGCAGGCCCTCAAACTTCTGGCAGAA
CCAGCGGTGATTGCCAGTGCAACCTCTACCTAG

Upstream 100 bases:

>100_bases
AACTTATTTTTGAGAATTACGGAAAATAAAATCAACGTTACAAAGCGCTTTTGAGGAGCTGGAGGGGCAAGATAAAGCCG
AATATCGTTAGAATTTACAA

Downstream 100 bases:

>100_bases
TCGGACCTATCATGATCCCTTACATGGGAGTATTACCTTAACGGCCCAAGATCCGGTTGAATCTCTGTTGATTCAGTTGA
TCGATACCCCTGAATTCCAA

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MIKRIVSYIFILQFALSLAIAPPAIALTEEQLLYNEAWRLVDQAYVDDSFNHQDWRTVRQKALTTQMPDRESTYKAIRDM
LDSLGDPFTRLLQPKQYQSLKTSTSGELTGVGLQIIQNEESGYLEVLAPIEGSPAASAGVQAADQILKIDNIPTTDLSLD
EAAERMRGPIGSTVKLKVERPDQGVLLFPIKRDRIAINPVFAELRPQPNGQDIGFIRLRQFNANATQEMQAAITRLEAEG
AEGYILDLRNNPGGLLQAGVEIAQMWLDPSPIVYTVDRQGIRNSFDSKAGSLTDAPLIVLVNRGSASASEILAGALQDNG
RAQLVGEQTFGKGSIQSLFNLSDGSGLAITIAKYETPSHRNINKVGIKPDKIVALKTLRSDQVGTDADTQYQQALKLLAE
PAVIASATST

Sequences:

>Translated_410_residues
MIKRIVSYIFILQFALSLAIAPPAIALTEEQLLYNEAWRLVDQAYVDDSFNHQDWRTVRQKALTTQMPDRESTYKAIRDM
LDSLGDPFTRLLQPKQYQSLKTSTSGELTGVGLQIIQNEESGYLEVLAPIEGSPAASAGVQAADQILKIDNIPTTDLSLD
EAAERMRGPIGSTVKLKVERPDQGVLLFPIKRDRIAINPVFAELRPQPNGQDIGFIRLRQFNANATQEMQAAITRLEAEG
AEGYILDLRNNPGGLLQAGVEIAQMWLDPSPIVYTVDRQGIRNSFDSKAGSLTDAPLIVLVNRGSASASEILAGALQDNG
RAQLVGEQTFGKGSIQSLFNLSDGSGLAITIAKYETPSHRNINKVGIKPDKIVALKTLRSDQVGTDADTQYQQALKLLAE
PAVIASATST
>Mature_410_residues
MIKRIVSYIFILQFALSLAIAPPAIALTEEQLLYNEAWRLVDQAYVDDSFNHQDWRTVRQKALTTQMPDRESTYKAIRDM
LDSLGDPFTRLLQPKQYQSLKTSTSGELTGVGLQIIQNEESGYLEVLAPIEGSPAASAGVQAADQILKIDNIPTTDLSLD
EAAERMRGPIGSTVKLKVERPDQGVLLFPIKRDRIAINPVFAELRPQPNGQDIGFIRLRQFNANATQEMQAAITRLEAEG
AEGYILDLRNNPGGLLQAGVEIAQMWLDPSPIVYTVDRQGIRNSFDSKAGSLTDAPLIVLVNRGSASASEILAGALQDNG
RAQLVGEQTFGKGSIQSLFNLSDGSGLAITIAKYETPSHRNINKVGIKPDKIVALKTLRSDQVGTDADTQYQQALKLLAE
PAVIASATST

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=311, Percent_Identity=30.5466237942122, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 44686; Mature: 44686

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRIVSYIFILQFALSLAIAPPAIALTEEQLLYNEAWRLVDQAYVDDSFNHQDWRTVRQ
CHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KALTTQMPDRESTYKAIRDMLDSLGDPFTRLLQPKQYQSLKTSTSGELTGVGLQIIQNEE
HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCEEECEEEEEECCC
SGYLEVLAPIEGSPAASAGVQAADQILKIDNIPTTDLSLDEAAERMRGPIGSTVKLKVER
CCEEEEEECCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEC
PDQGVLLFPIKRDRIAINPVFAELRPQPNGQDIGFIRLRQFNANATQEMQAAITRLEAEG
CCCCEEEEEECCCCEEECCHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCC
AEGYILDLRNNPGGLLQAGVEIAQMWLDPSPIVYTVDRQGIRNSFDSKAGSLTDAPLIVL
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEEE
VNRGSASASEILAGALQDNGRAQLVGEQTFGKGSIQSLFNLSDGSGLAITIAKYETPSHR
EECCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCC
NINKVGIKPDKIVALKTLRSDQVGTDADTQYQQALKLLAEPAVIASATST
CCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCC
>Mature Secondary Structure
MIKRIVSYIFILQFALSLAIAPPAIALTEEQLLYNEAWRLVDQAYVDDSFNHQDWRTVRQ
CHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KALTTQMPDRESTYKAIRDMLDSLGDPFTRLLQPKQYQSLKTSTSGELTGVGLQIIQNEE
HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCEEECEEEEEECCC
SGYLEVLAPIEGSPAASAGVQAADQILKIDNIPTTDLSLDEAAERMRGPIGSTVKLKVER
CCEEEEEECCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEC
PDQGVLLFPIKRDRIAINPVFAELRPQPNGQDIGFIRLRQFNANATQEMQAAITRLEAEG
CCCCEEEEEECCCCEEECCHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCC
AEGYILDLRNNPGGLLQAGVEIAQMWLDPSPIVYTVDRQGIRNSFDSKAGSLTDAPLIVL
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEEE
VNRGSASASEILAGALQDNGRAQLVGEQTFGKGSIQSLFNLSDGSGLAITIAKYETPSHR
EECCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCC
NINKVGIKPDKIVALKTLRSDQVGTDADTQYQQALKLLAEPAVIASATST
CCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1421151 [H]