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The map label for this gene is deoC [H]

Identifier: 158337749

GI number: 158337749

Start: 4666278

End: 4666988

Strand: Direct

Name: deoC [H]

Synonym: AM1_4633

Alternate gene names: 158337749

Gene position: 4666278-4666988 (Clockwise)

Preceding gene: 158337748

Following gene: 158337750

Centisome position: 71.75

GC content: 52.04

Gene sequence:

>711_bases
TTGAGGTGCAGTGTGACCCTAACGGTGGCAGATATTGATATCACTCGTTATATCGATCACACCCTTCTCGATCCCTTGGC
ATCAGAGGATGAGATCGCAACCCTCTGCGACCAAGCAATCCGATTTGAATTTCCGGCGGTTTGTATTTACCCCACCCATA
TCAAAACTGCCGTTAACCGTCTCCACCAATATTCCCCCAAAGTTTGTACTGTAATCGGCTTCCCCAGTGGGGCCACCACG
TCTGCCGTCAAACTCTATGAAGCTCAAGATGCTGTCGATCAAGGGGCAACAGAGCTAGATGTGGTGATTAATATCGGCTG
GTTGAAGGCAGGAAAAGTCGATGCCGTTCACCAAGAACTCGCCAATATCTGTGCAACCACAGGCCAAACCGTTAAAGCAA
TTTTAGAAACGACCCTCCTCACAGATGCCGAAAAACGGTTAGGGGCAGAAGTGAGCCTGGATGCAGGGGTCGCCTTTCTC
AAAACAAGTACGGGATGGCACGGCGGAGCCACCCCTGCTGATATAAAATTATTATCAAAGGTCGCACGCGATCGTGTGGG
CGTTAAAGCCTCGGGTGGGATTCGGACCCTCGAGCAGGCCTTAGCACTTATCGCGGCAGGAGCCAACCGCTTGGGAACCT
CCCGAGGGGTTGATCTTGTACGGATGGCTACAGCTGAGATTGAATCGCCTGAGCCATCAGGCCCTGGATAG

Upstream 100 bases:

>100_bases
ACAGCGCTAAAATAACGGGTTTTTAAAAGCCCATGCCATCCATATTCTTGATACATTGGACTAGGAAAGCTAAACAGGTT
TTCCCAAATACGATGGGCAT

Downstream 100 bases:

>100_bases
TTCCGTTCTCGAAATATCCACCTCAAGATGTTTGGATCAAGGCAAGCGGGTGTCCACGCTATCCTGCTTCCCCCAACTCG
GTTTTCTCGATCCAGGTAGA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRCSVTLTVADIDITRYIDHTLLDPLASEDEIATLCDQAIRFEFPAVCIYPTHIKTAVNRLHQYSPKVCTVIGFPSGATT
SAVKLYEAQDAVDQGATELDVVINIGWLKAGKVDAVHQELANICATTGQTVKAILETTLLTDAEKRLGAEVSLDAGVAFL
KTSTGWHGGATPADIKLLSKVARDRVGVKASGGIRTLEQALALIAAGANRLGTSRGVDLVRMATAEIESPEPSGPG

Sequences:

>Translated_236_residues
MRCSVTLTVADIDITRYIDHTLLDPLASEDEIATLCDQAIRFEFPAVCIYPTHIKTAVNRLHQYSPKVCTVIGFPSGATT
SAVKLYEAQDAVDQGATELDVVINIGWLKAGKVDAVHQELANICATTGQTVKAILETTLLTDAEKRLGAEVSLDAGVAFL
KTSTGWHGGATPADIKLLSKVARDRVGVKASGGIRTLEQALALIAAGANRLGTSRGVDLVRMATAEIESPEPSGPG
>Mature_236_residues
MRCSVTLTVADIDITRYIDHTLLDPLASEDEIATLCDQAIRFEFPAVCIYPTHIKTAVNRLHQYSPKVCTVIGFPSGATT
SAVKLYEAQDAVDQGATELDVVINIGWLKAGKVDAVHQELANICATTGQTVKAILETTLLTDAEKRLGAEVSLDAGVAFL
KTSTGWHGGATPADIKLLSKVARDRVGVKASGGIRTLEQALALIAAGANRLGTSRGVDLVRMATAEIESPEPSGPG

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=183, Percent_Identity=32.7868852459016, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1790841, Length=216, Percent_Identity=33.7962962962963, Blast_Score=79, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19922098, Length=185, Percent_Identity=30.8108108108108, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24910; Mature: 24910

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCSVTLTVADIDITRYIDHTLLDPLASEDEIATLCDQAIRFEFPAVCIYPTHIKTAVNR
CCEEEEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
LHQYSPKVCTVIGFPSGATTSAVKLYEAQDAVDQGATELDVVINIGWLKAGKVDAVHQEL
HHHCCCCEEEEEECCCCCCHHHEEEHHHHHHHHCCCCEEEEEEEECEECCCCHHHHHHHH
ANICATTGQTVKAILETTLLTDAEKRLGAEVSLDAGVAFLKTSTGWHGGATPADIKLLSK
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHH
VARDRVGVKASGGIRTLEQALALIAAGANRLGTSRGVDLVRMATAEIESPEPSGPG
HHHHHCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRCSVTLTVADIDITRYIDHTLLDPLASEDEIATLCDQAIRFEFPAVCIYPTHIKTAVNR
CCEEEEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
LHQYSPKVCTVIGFPSGATTSAVKLYEAQDAVDQGATELDVVINIGWLKAGKVDAVHQEL
HHHCCCCEEEEEECCCCCCHHHEEEHHHHHHHHCCCCEEEEEEEECEECCCCHHHHHHHH
ANICATTGQTVKAILETTLLTDAEKRLGAEVSLDAGVAFLKTSTGWHGGATPADIKLLSK
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHH
VARDRVGVKASGGIRTLEQALALIAAGANRLGTSRGVDLVRMATAEIESPEPSGPG
HHHHHCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA