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The map label for this gene is radC [C]

Identifier: 158337489

GI number: 158337489

Start: 4397889

End: 4398620

Strand: Direct

Name: radC [C]

Synonym: AM1_4368

Alternate gene names: 158337489

Gene position: 4397889-4398620 (Clockwise)

Preceding gene: 158337488

Following gene: 158337490

Centisome position: 67.62

GC content: 49.86

Gene sequence:

>732_bases
ATGACCTACAGCTTAAGGATTTTAGACTTACCCGAAAGCGATCGCCCTCGTGAACGTCTTATTGCCCAAGGGGCTAAATA
TTTGACTCATGCAGAGTTACTGGCCATACTCCTCGGGACAGGCCAAGGACCAGGCAAGTTGTCTGCGGTAGGTTTAGGTC
AGCATGTTCTGCAGCATTTCAGCGAACATCAGCAAGATCCACTTACGGTTCTGAGGGATGTCAATGCGTCTGAACTCACC
ACTATTCAAGGTATAGGTCCTGCGAAGGCGACGACCATCCTGGCTGCAATTGAATTAGGGAAAAGAATTTGCCAAGCTCG
TCCGCCTGAATTGACTGTGATAGATGATCCAGCCGTTGCTGCTGCGGCCTTAGCCGGTGAGTTAATGTGGCAATCTCAAG
AACGTTTTGCCGTACTTCTGCTAGATGTCAAGCATCGGTTACTCGGAACGCAAGTGGTGAGTATTGGCACTGCGACGGAA
ACCCTAGCCCATCCCCGCGATATTTTTCGAGAAATTATCCGTAAGGGAGCAACCCGAGCCATTGTGGCCCATAACCATCC
ATCGGGGCAGACGGATCCTAGCCCTGAAGATCTTGAATTGACTCAGCAGCTGCTCTCAGGTGCGCAAATTTTAGGCTTAC
CTTTACTGGATCATCTCATTTTGGGGAACGGTGACTTTACCAGCCTTCGCCAAACGACATCTCTGTGGAACGATTGTCCT
CAAGACCTATAG

Upstream 100 bases:

>100_bases
ATGCTCTGTTTGAGTGTGGGACGAAAGTGGGTGTACTAAACATGAGTGCGAGTGTCGATGCCCATGTCCTGTGATTTAGG
GAGCCCGTAATTTCGCGACG

Downstream 100 bases:

>100_bases
TTCTATATTTCTGCGCCAGTCATAGACTTAAATACCCTCAATTTTCAAGGCACAAAGTCTTTAGAGAATAGGGCTGCCTT
GTACGATATGATGATTGAGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTYSLRILDLPESDRPRERLIAQGAKYLTHAELLAILLGTGQGPGKLSAVGLGQHVLQHFSEHQQDPLTVLRDVNASELT
TIQGIGPAKATTILAAIELGKRICQARPPELTVIDDPAVAAAALAGELMWQSQERFAVLLLDVKHRLLGTQVVSIGTATE
TLAHPRDIFREIIRKGATRAIVAHNHPSGQTDPSPEDLELTQQLLSGAQILGLPLLDHLILGNGDFTSLRQTTSLWNDCP
QDL

Sequences:

>Translated_243_residues
MTYSLRILDLPESDRPRERLIAQGAKYLTHAELLAILLGTGQGPGKLSAVGLGQHVLQHFSEHQQDPLTVLRDVNASELT
TIQGIGPAKATTILAAIELGKRICQARPPELTVIDDPAVAAAALAGELMWQSQERFAVLLLDVKHRLLGTQVVSIGTATE
TLAHPRDIFREIIRKGATRAIVAHNHPSGQTDPSPEDLELTQQLLSGAQILGLPLLDHLILGNGDFTSLRQTTSLWNDCP
QDL
>Mature_242_residues
TYSLRILDLPESDRPRERLIAQGAKYLTHAELLAILLGTGQGPGKLSAVGLGQHVLQHFSEHQQDPLTVLRDVNASELTT
IQGIGPAKATTILAAIELGKRICQARPPELTVIDDPAVAAAALAGELMWQSQERFAVLLLDVKHRLLGTQVVSIGTATET
LAHPRDIFREIIRKGATRAIVAHNHPSGQTDPSPEDLELTQQLLSGAQILGLPLLDHLILGNGDFTSLRQTTSLWNDCPQ
DL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=32.7102803738318, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI2367100, Length=98, Percent_Identity=37.7551020408163, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788997, Length=97, Percent_Identity=34.020618556701, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788312, Length=123, Percent_Identity=28.4552845528455, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4368_ACAM1 (B0CEV0)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001518664.1
- ProteinModelPortal:   B0CEV0
- SMR:   B0CEV0
- GeneID:   5683171
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_4368
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   AMAR329726:AM1_4368-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466

EC number: NA

Molecular weight: Translated: 26319; Mature: 26187

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYSLRILDLPESDRPRERLIAQGAKYLTHAELLAILLGTGQGPGKLSAVGLGQHVLQHF
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
SEHQQDPLTVLRDVNASELTTIQGIGPAKATTILAAIELGKRICQARPPELTVIDDPAVA
HHCCCCHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHH
AAALAGELMWQSQERFAVLLLDVKHRLLGTQVVSIGTATETLAHPRDIFREIIRKGATRA
HHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCEE
IVAHNHPSGQTDPSPEDLELTQQLLSGAQILGLPLLDHLILGNGDFTSLRQTTSLWNDCP
EEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
QDL
CCC
>Mature Secondary Structure 
TYSLRILDLPESDRPRERLIAQGAKYLTHAELLAILLGTGQGPGKLSAVGLGQHVLQHF
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
SEHQQDPLTVLRDVNASELTTIQGIGPAKATTILAAIELGKRICQARPPELTVIDDPAVA
HHCCCCHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHH
AAALAGELMWQSQERFAVLLLDVKHRLLGTQVVSIGTATETLAHPRDIFREIIRKGATRA
HHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCEE
IVAHNHPSGQTDPSPEDLELTQQLLSGAQILGLPLLDHLILGNGDFTSLRQTTSLWNDCP
EEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
QDL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA