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The map label for this gene is yjbC [C]

Identifier: 158337477

GI number: 158337477

Start: 4385308

End: 4386117

Strand: Reverse

Name: yjbC [C]

Synonym: AM1_4356

Alternate gene names: 158337477

Gene position: 4386117-4385308 (Counterclockwise)

Preceding gene: 158337478

Following gene: 158337476

Centisome position: 67.44

GC content: 48.4

Gene sequence:

>810_bases
ATGGAAATCCGGCTACAGAAATTGTTATCTCAATGGGGCGTTGCCTCACGCCGTCAGGCAGAACAATTAATCTTAGCGGG
ACAGGTTCAGCTCAACGGACACACAGCTGAATTAGGCCAAAAAGCCGATCCTGATCAAGATCAAATTACTCTCAACGGCC
AGATTCTCAATCCCACGGATCGCCCTCAACCACTCTATTTACTGGTGAACAAACCGAAAGGCGTTGTTTCCACTTGTCAA
GATCCCCAACATCGACGAACCGTGTTGGAGCTGCTGCCTAAAACCTATCAACAAGGACAAGGGCTGCATCCGGTCGGACG
ACTGGATGTTGCCTCTACCGGGGCATTGCTCTTAACCAATGATGGACAACTCACCTTTGCCCTGACCCACCCGCGATTCC
ATATCGCCAAGACCTATCAAGTTTGGATAGAGGGATGCCCGCCCCCTGAAATCCTAGATCGATGGCGTCAAGGAATTCAC
CTAGATGGCCGAACAACCTTACCCGCCCAAGTTGAGATCCTAAAGCCTTACCAAAGCCATACCAATTCCATTTGTTTAGA
GGTTATTCTACAGGAAGGGAGGAATCGTCAAATTCGTCGAATTGCTGAACAACTGGGCTATCCGGTGCGTAAATTACACC
GAACCCAGATTGGTTCAATATCCTTGCACTCACCATCAGGTAAACTATTACCCCAGGGACGCTATCGGTCGTTAACAGCT
TCAGAAATGAAGAATTTGCGACGTTTGATCAAAGTTAGGAGCAGTATAAGCCCAAGAAGGAGTTCTCCCTATGAATCCGC
TCGAAGTTGA

Upstream 100 bases:

>100_bases
TTGAGAAAATAAATAAAGAGCTGATTCTGTCGTTATGTCTCACTATATGGCTACCTCCATTTCTAGTCGTTAGAATTGGG
AAATCAATCCTCAACCATTT

Downstream 100 bases:

>100_bases
GCCAGATTTAACGCAAAAGCTGGCAGAGATCGGTACTCGCTTGCGTGAAGCACGCCAGGCCCAGGACACCTCCTTAGAAG
AGATTTCTGGGAAAACCATG

Product: pseudouridine synthase family 1 protein

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MEIRLQKLLSQWGVASRRQAEQLILAGQVQLNGHTAELGQKADPDQDQITLNGQILNPTDRPQPLYLLVNKPKGVVSTCQ
DPQHRRTVLELLPKTYQQGQGLHPVGRLDVASTGALLLTNDGQLTFALTHPRFHIAKTYQVWIEGCPPPEILDRWRQGIH
LDGRTTLPAQVEILKPYQSHTNSICLEVILQEGRNRQIRRIAEQLGYPVRKLHRTQIGSISLHSPSGKLLPQGRYRSLTA
SEMKNLRRLIKVRSSISPRRSSPYESARS

Sequences:

>Translated_269_residues
MEIRLQKLLSQWGVASRRQAEQLILAGQVQLNGHTAELGQKADPDQDQITLNGQILNPTDRPQPLYLLVNKPKGVVSTCQ
DPQHRRTVLELLPKTYQQGQGLHPVGRLDVASTGALLLTNDGQLTFALTHPRFHIAKTYQVWIEGCPPPEILDRWRQGIH
LDGRTTLPAQVEILKPYQSHTNSICLEVILQEGRNRQIRRIAEQLGYPVRKLHRTQIGSISLHSPSGKLLPQGRYRSLTA
SEMKNLRRLIKVRSSISPRRSSPYESARS
>Mature_269_residues
MEIRLQKLLSQWGVASRRQAEQLILAGQVQLNGHTAELGQKADPDQDQITLNGQILNPTDRPQPLYLLVNKPKGVVSTCQ
DPQHRRTVLELLPKTYQQGQGLHPVGRLDVASTGALLLTNDGQLTFALTHPRFHIAKTYQVWIEGCPPPEILDRWRQGIH
LDGRTTLPAQVEILKPYQSHTNSICLEVILQEGRNRQIRRIAEQLGYPVRKLHRTQIGSISLHSPSGKLLPQGRYRSLTA
SEMKNLRRLIKVRSSISPRRSSPYESARS

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=253, Percent_Identity=32.8063241106719, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787524, Length=256, Percent_Identity=33.984375, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788510, Length=250, Percent_Identity=32.8, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI87081838, Length=185, Percent_Identity=35.6756756756757, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30375; Mature: 30375

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRLQKLLSQWGVASRRQAEQLILAGQVQLNGHTAELGQKADPDQDQITLNGQILNPTD
CCCHHHHHHHHHCCCHHHHHHHEEEEEEEEECCCHHHCCCCCCCCCCEEEECCEEECCCC
RPQPLYLLVNKPKGVVSTCQDPQHRRTVLELLPKTYQQGQGLHPVGRLDVASTGALLLTN
CCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEC
DGQLTFALTHPRFHIAKTYQVWIEGCPPPEILDRWRQGIHLDGRTTLPAQVEILKPYQSH
CCEEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHCEECCCCCCCCCEEEEECCHHHH
TNSICLEVILQEGRNRQIRRIAEQLGYPVRKLHRTQIGSISLHSPSGKLLPQGRYRSLTA
HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCH
SEMKNLRRLIKVRSSISPRRSSPYESARS
HHHHHHHHHHHHHHCCCCCCCCCCHHCCC
>Mature Secondary Structure
MEIRLQKLLSQWGVASRRQAEQLILAGQVQLNGHTAELGQKADPDQDQITLNGQILNPTD
CCCHHHHHHHHHCCCHHHHHHHEEEEEEEEECCCHHHCCCCCCCCCCEEEECCEEECCCC
RPQPLYLLVNKPKGVVSTCQDPQHRRTVLELLPKTYQQGQGLHPVGRLDVASTGALLLTN
CCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEC
DGQLTFALTHPRFHIAKTYQVWIEGCPPPEILDRWRQGIHLDGRTTLPAQVEILKPYQSH
CCEEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHCEECCCCCCCCCEEEEECCHHHH
TNSICLEVILQEGRNRQIRRIAEQLGYPVRKLHRTQIGSISLHSPSGKLLPQGRYRSLTA
HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCH
SEMKNLRRLIKVRSSISPRRSSPYESARS
HHHHHHHHHHHHHHCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]