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The map label for this gene is yhgF [C]

Identifier: 158337244

GI number: 158337244

Start: 4154682

End: 4156844

Strand: Direct

Name: yhgF [C]

Synonym: AM1_4121

Alternate gene names: 158337244

Gene position: 4154682-4156844 (Clockwise)

Preceding gene: 158337242

Following gene: 158337246

Centisome position: 63.88

GC content: 50.16

Gene sequence:

>2163_bases
ATGTTGAATATTGTTCAAATACTCTCTCAAGAGCTATCGATTTCCCCTCAGCGCCTGCAAAATGCCTTGGATTTGTTTGC
AGAAGGGGCCACGATTCCCTTTGTGGCGCGGTATCGGAAAGAGCGAACCGGGCAAATGGATGAGACCCAGCTGCGGCAGC
TCTCAGAACGGTTTACCTACCTGACGGAACTGGAAGAGCGCAAAAAGACGATCCTAGAATCTATTGCTCAACAGAATAAG
CTAACAGAGCTGCTCCAAGCCAAGATCGAAGCTTGTTTGCTGAAAACTGAACTCGAAGATCTTTACTTGCCCTATCGTCC
TAAACGACGCACCCGAGCCACCATTGCCAAAGAAAAAGGATTAGAACCCTTGGCTCAATGGCTGCAAGCCCTCAATAAAC
CCACGGCAACCCTGAGCCAGGATCTGGCAACAGAAGCGGCTCGCTATATCAATAAAGATGTCGCCACTACCGAAGATGCA
TTGCAGGGGGCCTCGGATATTTTGGCGGAAGGAATTGCCGATCAGGCCGAGATTCGAACCCATCTCAAACATCGCTTCTT
CCAAGTCGGCGAGTTTGTATCTCAGGTGAAATCTAAATATCCAGAAGGGAGCACCAAGTTTGAGATGTACCGAAGTTACC
AAGCCCGAGCCAAGAATATTCTGGCCCATAATTTACTAGCCCTTTATCGAGGAGAGGCGGAAGGTATTCTCAAAGTCGAG
TTGGCGATTGATGAAGAGCGAATCTTGGGAGATATCGAAGAGCGGGTGATTCGTTCCAAAATTCGAGCCGTGCGAGATTT
TTTCCGAGGGGTGGTGAAGGATGCCTATACTCGCCTGATTAAACCATCTGTGGTCAAGGAGGTGCGGGCTGCCTGCAAAG
CGGAGGCGGATAGCGAGTCGATCCAAACCTTTGCCACAAATTTACGGGAACTGCTGCTCTCTAGTCCTGCGGGGATGAAG
CCTACATTGGGGATTGATCCAGGGTTTCGTACGGGCTGCAAAGTGGTTGCCCTAGATCATACGGGAAAGTTTTTGGAATA
CCAGGCGATTTTTCCCCACCAGGCAGTGGGACAGCGGGACCAAGCTGCCAAAACTGTTGCCCGACTTATTCAAACGTATC
AAATCGACCTGATTGCCATTGGCAATGGAACAGCGGGCCGGGAAACCGATGCCTTCGTAGCGGATGTCTTAAAAACCCTA
GACCGTAAGCCCATCAAGGTGATGGTCAATGAATCCGGTGCCTCGATTTATTCGGCCAGTGAGATTGCCATTGCCGAGTT
TCCTGATTTAGATATCACGGTGCGCGGGGCGATCAGTATTGCCCGCCGCCTCCAAGATCCCCTGGCAGAACTCGTCAAAC
TCGATCCCAAGTCCATCGGCGTGGGCCAGTATCAGCATGATGTGGATCAAAAGCTGCTGAAGCAAAAGCTAGAAGAGACG
GTGGAAAGCTGTGTGAACTATGTGGGGGTTGATTTGAATACGGCTTCCAAGGAACTACTGACTTTTGTGTCGGGGATTAC
GGGGGCGATTGCCAACAATATCATTGCCTATCGCAACCAAAATGGGGCATTCAAAAACCGCAAGCAGCTTCTCAAAGTCG
CCAAGCTCGGCCCCAAAGCCTTTGAGCAGGCCGCTGGCTTTTTGAGAATCCGGACGGGGGATAATCCCCTGGACAATACC
GCTGTCCATCCCGAAAGTTATGGTGTGGTCAAGACCATTAGTGCCGATCTAGAACTTCCCCTTAGCCAGATCGCGAAGAT
TCCCGCGCATCTGAGACCGGGAGATCTAAAAACCTATGTGACTGAGACGATTGGTGAGCCTACTCTCAAAGACATCATGG
CGGAGTTGGAAAAACCAGGCCGCGATCCTCGGGCTGAGTTCAAATACGCCACGTTTAAAGAAGGTATTACGGAGCTGACG
GATCTCAAGCCTGAAATGGAGTTGGAGGGGATTGTCACGAATGTCACCAATTTTGGGGCTTTTGTGGATGTTGGCGTCCA
TCAAGATGGTCTGGTTCATATTTCCCAAATGGCGGATCAATTTGTGAAAGATCCTAAGCAGATTGTGAAAGTGGGGCAAG
TGGTCAAGGTGCGGGTACTAGAGGTGAACCAAAAACTCAAACGTATTGGTTTATCGATGCGTTCGACCTCTAGCACAAGA
TAG

Upstream 100 bases:

>100_bases
TGGTTGGGCTGCATGAACTAGAGAATCATCTTGAAAAGTAGCTATAGCTAGCTTACGCCTTAAACTATGGGGAGACCTAG
GATCTGACATTGTTCTGCCC

Downstream 100 bases:

>100_bases
CGTTCGCTGCCTTTGTTGTTAGTCAGAGCCAATTGTTCAGGCTGGTCAAGATGTGTAAAAGGGAGGGGAGTCCAAGCATG
GCTATCCTTGGACTTATGCA

Product: S1 RNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 720

Protein sequence:

>720_residues
MLNIVQILSQELSISPQRLQNALDLFAEGATIPFVARYRKERTGQMDETQLRQLSERFTYLTELEERKKTILESIAQQNK
LTELLQAKIEACLLKTELEDLYLPYRPKRRTRATIAKEKGLEPLAQWLQALNKPTATLSQDLATEAARYINKDVATTEDA
LQGASDILAEGIADQAEIRTHLKHRFFQVGEFVSQVKSKYPEGSTKFEMYRSYQARAKNILAHNLLALYRGEAEGILKVE
LAIDEERILGDIEERVIRSKIRAVRDFFRGVVKDAYTRLIKPSVVKEVRAACKAEADSESIQTFATNLRELLLSSPAGMK
PTLGIDPGFRTGCKVVALDHTGKFLEYQAIFPHQAVGQRDQAAKTVARLIQTYQIDLIAIGNGTAGRETDAFVADVLKTL
DRKPIKVMVNESGASIYSASEIAIAEFPDLDITVRGAISIARRLQDPLAELVKLDPKSIGVGQYQHDVDQKLLKQKLEET
VESCVNYVGVDLNTASKELLTFVSGITGAIANNIIAYRNQNGAFKNRKQLLKVAKLGPKAFEQAAGFLRIRTGDNPLDNT
AVHPESYGVVKTISADLELPLSQIAKIPAHLRPGDLKTYVTETIGEPTLKDIMAELEKPGRDPRAEFKYATFKEGITELT
DLKPEMELEGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKVRVLEVNQKLKRIGLSMRSTSSTR

Sequences:

>Translated_720_residues
MLNIVQILSQELSISPQRLQNALDLFAEGATIPFVARYRKERTGQMDETQLRQLSERFTYLTELEERKKTILESIAQQNK
LTELLQAKIEACLLKTELEDLYLPYRPKRRTRATIAKEKGLEPLAQWLQALNKPTATLSQDLATEAARYINKDVATTEDA
LQGASDILAEGIADQAEIRTHLKHRFFQVGEFVSQVKSKYPEGSTKFEMYRSYQARAKNILAHNLLALYRGEAEGILKVE
LAIDEERILGDIEERVIRSKIRAVRDFFRGVVKDAYTRLIKPSVVKEVRAACKAEADSESIQTFATNLRELLLSSPAGMK
PTLGIDPGFRTGCKVVALDHTGKFLEYQAIFPHQAVGQRDQAAKTVARLIQTYQIDLIAIGNGTAGRETDAFVADVLKTL
DRKPIKVMVNESGASIYSASEIAIAEFPDLDITVRGAISIARRLQDPLAELVKLDPKSIGVGQYQHDVDQKLLKQKLEET
VESCVNYVGVDLNTASKELLTFVSGITGAIANNIIAYRNQNGAFKNRKQLLKVAKLGPKAFEQAAGFLRIRTGDNPLDNT
AVHPESYGVVKTISADLELPLSQIAKIPAHLRPGDLKTYVTETIGEPTLKDIMAELEKPGRDPRAEFKYATFKEGITELT
DLKPEMELEGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKVRVLEVNQKLKRIGLSMRSTSSTR
>Mature_720_residues
MLNIVQILSQELSISPQRLQNALDLFAEGATIPFVARYRKERTGQMDETQLRQLSERFTYLTELEERKKTILESIAQQNK
LTELLQAKIEACLLKTELEDLYLPYRPKRRTRATIAKEKGLEPLAQWLQALNKPTATLSQDLATEAARYINKDVATTEDA
LQGASDILAEGIADQAEIRTHLKHRFFQVGEFVSQVKSKYPEGSTKFEMYRSYQARAKNILAHNLLALYRGEAEGILKVE
LAIDEERILGDIEERVIRSKIRAVRDFFRGVVKDAYTRLIKPSVVKEVRAACKAEADSESIQTFATNLRELLLSSPAGMK
PTLGIDPGFRTGCKVVALDHTGKFLEYQAIFPHQAVGQRDQAAKTVARLIQTYQIDLIAIGNGTAGRETDAFVADVLKTL
DRKPIKVMVNESGASIYSASEIAIAEFPDLDITVRGAISIARRLQDPLAELVKLDPKSIGVGQYQHDVDQKLLKQKLEET
VESCVNYVGVDLNTASKELLTFVSGITGAIANNIIAYRNQNGAFKNRKQLLKVAKLGPKAFEQAAGFLRIRTGDNPLDNT
AVHPESYGVVKTISADLELPLSQIAKIPAHLRPGDLKTYVTETIGEPTLKDIMAELEKPGRDPRAEFKYATFKEGITELT
DLKPEMELEGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKVRVLEVNQKLKRIGLSMRSTSSTR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=33.921815889029, Blast_Score=390, Evalue=1e-108,
Organism=Homo sapiens, GI27597090, Length=716, Percent_Identity=23.3240223463687, Blast_Score=102, Evalue=9e-22,
Organism=Escherichia coli, GI87082262, Length=726, Percent_Identity=50.1377410468319, Blast_Score=671, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=44.7368421052632, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=726, Percent_Identity=27.6859504132231, Blast_Score=217, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17552892, Length=282, Percent_Identity=30.8510638297872, Blast_Score=100, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321552, Length=345, Percent_Identity=25.5072463768116, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=34.2857142857143, Blast_Score=399, Evalue=1e-111,
Organism=Drosophila melanogaster, GI24640080, Length=711, Percent_Identity=20.9563994374121, Blast_Score=92, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80155; Mature: 80155

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIVQILSQELSISPQRLQNALDLFAEGATIPFVARYRKERTGQMDETQLRQLSERFTY
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LTELEERKKTILESIAQQNKLTELLQAKIEACLLKTELEDLYLPYRPKRRTRATIAKEKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
LEPLAQWLQALNKPTATLSQDLATEAARYINKDVATTEDALQGASDILAEGIADQAEIRT
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
HLKHRFFQVGEFVSQVKSKYPEGSTKFEMYRSYQARAKNILAHNLLALYRGEAEGILKVE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LAIDEERILGDIEERVIRSKIRAVRDFFRGVVKDAYTRLIKPSVVKEVRAACKAEADSES
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHH
IQTFATNLRELLLSSPAGMKPTLGIDPGFRTGCKVVALDHTGKFLEYQAIFPHQAVGQRD
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHCCHH
QAAKTVARLIQTYQIDLIAIGNGTAGRETDAFVADVLKTLDRKPIKVMVNESGASIYSAS
HHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEECCC
EIAIAEFPDLDITVRGAISIARRLQDPLAELVKLDPKSIGVGQYQHDVDQKLLKQKLEET
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VESCVNYVGVDLNTASKELLTFVSGITGAIANNIIAYRNQNGAFKNRKQLLKVAKLGPKA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCHHH
FEQAAGFLRIRTGDNPLDNTAVHPESYGVVKTISADLELPLSQIAKIPAHLRPGDLKTYV
HHHHCCEEEEECCCCCCCCCCCCCCCCCHHHEECCCCCCCHHHHHHCCCCCCCCCHHHHH
TETIGEPTLKDIMAELEKPGRDPRAEFKYATFKEGITELTDLKPEMELEGIVTNVTNFGA
HHHCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
FVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKVRVLEVNQKLKRIGLSMRSTSSTR
EEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
>Mature Secondary Structure
MLNIVQILSQELSISPQRLQNALDLFAEGATIPFVARYRKERTGQMDETQLRQLSERFTY
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LTELEERKKTILESIAQQNKLTELLQAKIEACLLKTELEDLYLPYRPKRRTRATIAKEKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
LEPLAQWLQALNKPTATLSQDLATEAARYINKDVATTEDALQGASDILAEGIADQAEIRT
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
HLKHRFFQVGEFVSQVKSKYPEGSTKFEMYRSYQARAKNILAHNLLALYRGEAEGILKVE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LAIDEERILGDIEERVIRSKIRAVRDFFRGVVKDAYTRLIKPSVVKEVRAACKAEADSES
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHH
IQTFATNLRELLLSSPAGMKPTLGIDPGFRTGCKVVALDHTGKFLEYQAIFPHQAVGQRD
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHCCHH
QAAKTVARLIQTYQIDLIAIGNGTAGRETDAFVADVLKTLDRKPIKVMVNESGASIYSAS
HHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEECCC
EIAIAEFPDLDITVRGAISIARRLQDPLAELVKLDPKSIGVGQYQHDVDQKLLKQKLEET
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VESCVNYVGVDLNTASKELLTFVSGITGAIANNIIAYRNQNGAFKNRKQLLKVAKLGPKA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCHHH
FEQAAGFLRIRTGDNPLDNTAVHPESYGVVKTISADLELPLSQIAKIPAHLRPGDLKTYV
HHHHCCEEEEECCCCCCCCCCCCCCCCCHHHEECCCCCCCHHHHHHCCCCCCCCCHHHHH
TETIGEPTLKDIMAELEKPGRDPRAEFKYATFKEGITELTDLKPEMELEGIVTNVTNFGA
HHHCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
FVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKVRVLEVNQKLKRIGLSMRSTSSTR
EEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]