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The map label for this gene is psbU [H]

Identifier: 158337093

GI number: 158337093

Start: 4016190

End: 4016624

Strand: Reverse

Name: psbU [H]

Synonym: AM1_3966

Alternate gene names: 158337093

Gene position: 4016624-4016190 (Counterclockwise)

Preceding gene: 158337094

Following gene: 158337092

Centisome position: 61.76

GC content: 43.91

Gene sequence:

>435_bases
ATGCATTCGTTTGTCCGTCGTTTTGGTTTGATTGGTCTCGCTCTGGCAACATGCCTCAGCTTCTTTGGTTGGTCTCAACC
TGTAAATGCCCTTAATTTGCAGTCTGGCCCCACCATCGTGCTGGCAGACACCTACCGTAACCCAATTGACGAAAAGCTGG
GAACAGATTTTGGTCAGAAGATCGATGTCAATAACACTAATGTCCTTGCATTTATGAAATACAAGGGCCTTTATCCCACT
GTTGCGGGTAAAGTCGTGCAGAATGCCCCATACAGCAGTGTTGAAGACGTTTTACAAATTGATGGTTTAACCGACCAGCA
AAAGAAAGTTCTACAAGACAACATGGGTAACTTTACAATTTCTGATCCTGATCCTTCTTTGGTCGGTGGTCAAGATCGTT
ATAACCCAGGTTCTTACAAGCCTTTCATGAAGTAA

Upstream 100 bases:

>100_bases
TACCCTAAAAAAGTTTTTTTGTGGGTTGGAGTCTGTAGTTGATGATAGGCTCTACTAAGAGCTGTGTTGAAATCTCTGAG
ACAGGGAGGTACTTAAGGAA

Downstream 100 bases:

>100_bases
TTATCTTTATGTACTGATGGTTTAGGACGTGGCCGAACTTCTATTCCATCAGTTTGTACAATTGCACTCTCTGCCTACGC
AGTCGTTCATTTGACCACTG

Product: photosystem II 12 kDa extrinsic protein PsbU

Products: NA

Alternate protein names: PS II complex 12 kDa extrinsic protein; PSII-U [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MHSFVRRFGLIGLALATCLSFFGWSQPVNALNLQSGPTIVLADTYRNPIDEKLGTDFGQKIDVNNTNVLAFMKYKGLYPT
VAGKVVQNAPYSSVEDVLQIDGLTDQQKKVLQDNMGNFTISDPDPSLVGGQDRYNPGSYKPFMK

Sequences:

>Translated_144_residues
MHSFVRRFGLIGLALATCLSFFGWSQPVNALNLQSGPTIVLADTYRNPIDEKLGTDFGQKIDVNNTNVLAFMKYKGLYPT
VAGKVVQNAPYSSVEDVLQIDGLTDQQKKVLQDNMGNFTISDPDPSLVGGQDRYNPGSYKPFMK
>Mature_144_residues
MHSFVRRFGLIGLALATCLSFFGWSQPVNALNLQSGPTIVLADTYRNPIDEKLGTDFGQKIDVNNTNVLAFMKYKGLYPT
VAGKVVQNAPYSSVEDVLQIDGLTDQQKKVLQDNMGNFTISDPDPSLVGGQDRYNPGSYKPFMK

Specific function: Stabilizes the structure of photosystem II oxygen- evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation [H]

COG id: NA

COG function: NA

Gene ontology:
GO:0009523: Photosystem II 12 kDa extrinsic protein PsbU
GO:0009654: Photosystem II 12 kDa extrinsic protein PsbU
GO:0015979: Photosystem II 12 kDa extrinsic protein PsbU
GO:0019898: Photosystem II 12 kDa extrinsic protein PsbU
GO:0042549: Photosystem II 12 kDa extrinsic protein PsbU
GO:0006810: Photosystem II 12 kDa extrinsic protein 3
GO:0009579: Photosystem II 12 kDa extrinsic protein 3
GO:0016020: Photosystem II 12 kDa extrinsic protein 3
GO:0022900: Photosystem II 12 kDa extrinsic protein 3
GO:0042651: Photosystem II 12 kDa extrinsic protein 3

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010527 [H]

Pfam domain/function: PF06514 PsbU [H]

EC number: NA

Molecular weight: Translated: 15881; Mature: 15881

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSFVRRFGLIGLALATCLSFFGWSQPVNALNLQSGPTIVLADTYRNPIDEKLGTDFGQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCHHHHHHCCCCCCE
IDVNNTNVLAFMKYKGLYPTVAGKVVQNAPYSSVEDVLQIDGLTDQQKKVLQDNMGNFTI
ECCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEE
SDPDPSLVGGQDRYNPGSYKPFMK
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHSFVRRFGLIGLALATCLSFFGWSQPVNALNLQSGPTIVLADTYRNPIDEKLGTDFGQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCHHHHHHCCCCCCE
IDVNNTNVLAFMKYKGLYPTVAGKVVQNAPYSSVEDVLQIDGLTDQQKKVLQDNMGNFTI
ECCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEE
SDPDPSLVGGQDRYNPGSYKPFMK
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]