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The map label for this gene is exoD

Identifier: 158337065

GI number: 158337065

Start: 3988231

End: 3988863

Strand: Reverse

Name: exoD

Synonym: AM1_3938

Alternate gene names: NA

Gene position: 3988863-3988231 (Counterclockwise)

Preceding gene: 158337069

Following gene: 158337064

Centisome position: 61.33

GC content: 47.24

Gene sequence:

>633_bases
ATGGCACGCCTGTCATCAGAACTCCAGCGCACATTCTTAGACAACGAACATCCTCCTCATGTCACTTTGCAAGAATTGTT
GACTCTAGCAGAAGAAAGAGTATTTGGAGTCTTATTTGTTGTGTTAGCGCTTCCTTCCGCGCTCCCGGTCCCAGCGCCCG
GATACTCAGTTCCCTTTGGGGTTATGATTTTCCTGCTGTCTGTTCAGATGATTGCTGGTTCTAAGCAACCCTGGTTCCCC
CAAAAATTTTCGACTCACCCGGTCGCCCTCTCAACCGTACAGGGCATCTTAAAAAAGGCTTTACCTCGTCTACGCAACAT
TGAAGCCATCACTCGCCCCCGCTTTTTACCGATCTGTACCAGCGTTCCGGGACGGATTCTCATTGGCTGCATATTGGCGT
TGATGGGCATTTCAATGATGATACCTATCCCAGGAACCAATACAGTGCCCGCCATTGGCATTTTCGTCACTGGCTTTGGT
TTATTAGAAGATGATGGAGCCATTAGTTTGGGTGGCTTAGTCATCAGTTTATTTGGTGCTGCAATCACTATCTCAATGCT
GGTGGCTTTCATTTGGGGAGGAAGCAGCTTAATAGAGATAATAAAAGGATGGCTAGAGGGTCTATGGAATTAA

Upstream 100 bases:

>100_bases
GAAGATTGATCATCTCTGACAATTATTCCTCCTGGATAGGGCTTTTTGCTGTATTCTTTGCGTAATCCCTTACCATGCAT
GAGTTTGCTCTCAATTTTTT

Downstream 100 bases:

>100_bases
AGCTATTTTCTCCTCATAAATGCACCGAACAGCTTTATTTAGTTCTTTTCAGAATCATTCAGTAGCTTAAGCCACTATTT
CTTCTAGTAATAACCTGAAA

Product: exopolysaccharide synthesis protein ExoD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MARLSSELQRTFLDNEHPPHVTLQELLTLAEERVFGVLFVVLALPSALPVPAPGYSVPFGVMIFLLSVQMIAGSKQPWFP
QKFSTHPVALSTVQGILKKALPRLRNIEAITRPRFLPICTSVPGRILIGCILALMGISMMIPIPGTNTVPAIGIFVTGFG
LLEDDGAISLGGLVISLFGAAITISMLVAFIWGGSSLIEIIKGWLEGLWN

Sequences:

>Translated_210_residues
MARLSSELQRTFLDNEHPPHVTLQELLTLAEERVFGVLFVVLALPSALPVPAPGYSVPFGVMIFLLSVQMIAGSKQPWFP
QKFSTHPVALSTVQGILKKALPRLRNIEAITRPRFLPICTSVPGRILIGCILALMGISMMIPIPGTNTVPAIGIFVTGFG
LLEDDGAISLGGLVISLFGAAITISMLVAFIWGGSSLIEIIKGWLEGLWN
>Mature_209_residues
ARLSSELQRTFLDNEHPPHVTLQELLTLAEERVFGVLFVVLALPSALPVPAPGYSVPFGVMIFLLSVQMIAGSKQPWFPQ
KFSTHPVALSTVQGILKKALPRLRNIEAITRPRFLPICTSVPGRILIGCILALMGISMMIPIPGTNTVPAIGIFVTGFGL
LEDDGAISLGGLVISLFGAAITISMLVAFIWGGSSLIEIIKGWLEGLWN

Specific function: Unknown

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.meliloti exoD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22598; Mature: 22467

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLSSELQRTFLDNEHPPHVTLQELLTLAEERVFGVLFVVLALPSALPVPAPGYSVPFG
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
VMIFLLSVQMIAGSKQPWFPQKFSTHPVALSTVQGILKKALPRLRNIEAITRPRFLPICT
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHC
SVPGRILIGCILALMGISMMIPIPGTNTVPAIGIFVTGFGLLEDDGAISLGGLVISLFGA
CCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCEECCCCCHHHHHHHHHHHHH
AITISMLVAFIWGGSSLIEIIKGWLEGLWN
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARLSSELQRTFLDNEHPPHVTLQELLTLAEERVFGVLFVVLALPSALPVPAPGYSVPFG
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
VMIFLLSVQMIAGSKQPWFPQKFSTHPVALSTVQGILKKALPRLRNIEAITRPRFLPICT
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHC
SVPGRILIGCILALMGISMMIPIPGTNTVPAIGIFVTGFGLLEDDGAISLGGLVISLFGA
CCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCEECCCCCHHHHHHHHHHHHH
AITISMLVAFIWGGSSLIEIIKGWLEGLWN
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]