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The map label for this gene is jag [H]

Identifier: 158336229

GI number: 158336229

Start: 3121040

End: 3121564

Strand: Reverse

Name: jag [H]

Synonym: AM1_3091

Alternate gene names: 158336229

Gene position: 3121564-3121040 (Counterclockwise)

Preceding gene: 158336230

Following gene: 158336228

Centisome position: 48.0

GC content: 46.1

Gene sequence:

>525_bases
ATGAGTGAGTCAAATGTTCAACGGGGACAAGAGTGGTTGTCCAATTTGTTAGGCCATTTGGGAGTTGAGACTCCGGTCAG
TATCGATAAGCCAGATATTGCCCAAACTAAGTTTAAAGATTTTGGTGGGTTCTGGCTCACTATTGAAGACAGTGACTTGT
CTCCAGAGCAGGTTGACTTACTCATTGGCAACAATGGCCGCATGTTAGATGCGATTCAATATTTGATTAATTCAACTTTG
AATTTGGGCAAAGATAAAGAAGCCCGAACGGCCTATACGATTGAGATGTCTGATGTTCGCGTCAACCGGTATGAAGAGTT
GACGCAACTCGCAGACAAAGCGGCTCAATCGGTTCGCGAAACTGGGCAAGAATATGTGATGCCTCCGATTAATTCAGCGG
AACGGCGGTTAGTCCATACAATTTTGTTTGATGAGTCAGATTTAGAGACGGTCAGCCGTGGCCAAGAACCCGATCGCCGT
TTGGTGGTGATGCTGGCGGCGAATGAGGATGCTCAGAACGATTAA

Upstream 100 bases:

>100_bases
AAGAAGAGCGGGCATCGAAGGTGGTGGCTGAAGATGGTGAGCGGGGTGCGCTACCCTTTGAACCTGAGTACTCTAAAAAG
AAAGCATCGAGTTGACACCC

Downstream 100 bases:

>100_bases
GTAGAGAAGGGATGGAGAAAGGTTCCCCGCGATGGACAAGGTTTACATCCCAGACATTGAAAATGCGCCCAAGCAAACCC
TGGTTTTGGATGTTGATGAG

Product: single-stranded nucleic acid binding R3H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSESNVQRGQEWLSNLLGHLGVETPVSIDKPDIAQTKFKDFGGFWLTIEDSDLSPEQVDLLIGNNGRMLDAIQYLINSTL
NLGKDKEARTAYTIEMSDVRVNRYEELTQLADKAAQSVRETGQEYVMPPINSAERRLVHTILFDESDLETVSRGQEPDRR
LVVMLAANEDAQND

Sequences:

>Translated_174_residues
MSESNVQRGQEWLSNLLGHLGVETPVSIDKPDIAQTKFKDFGGFWLTIEDSDLSPEQVDLLIGNNGRMLDAIQYLINSTL
NLGKDKEARTAYTIEMSDVRVNRYEELTQLADKAAQSVRETGQEYVMPPINSAERRLVHTILFDESDLETVSRGQEPDRR
LVVMLAANEDAQND
>Mature_173_residues
SESNVQRGQEWLSNLLGHLGVETPVSIDKPDIAQTKFKDFGGFWLTIEDSDLSPEQVDLLIGNNGRMLDAIQYLINSTLN
LGKDKEARTAYTIEMSDVRVNRYEELTQLADKAAQSVRETGQEYVMPPINSAERRLVHTILFDESDLETVSRGQEPDRRL
VVMLAANEDAQND

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 19613; Mature: 19482

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESNVQRGQEWLSNLLGHLGVETPVSIDKPDIAQTKFKDFGGFWLTIEDSDLSPEQVDL
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCEEE
LIGNNGRMLDAIQYLINSTLNLGKDKEARTAYTIEMSDVRVNRYEELTQLADKAAQSVRE
EECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
TGQEYVMPPINSAERRLVHTILFDESDLETVSRGQEPDRRLVVMLAANEDAQND
CCHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
SESNVQRGQEWLSNLLGHLGVETPVSIDKPDIAQTKFKDFGGFWLTIEDSDLSPEQVDL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCEEE
LIGNNGRMLDAIQYLINSTLNLGKDKEARTAYTIEMSDVRVNRYEELTQLADKAAQSVRE
EECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
TGQEYVMPPINSAERRLVHTILFDESDLETVSRGQEPDRRLVVMLAANEDAQND
CCHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]