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The map label for this gene is ydaM [H]

Identifier: 158336184

GI number: 158336184

Start: 3070756

End: 3071346

Strand: Direct

Name: ydaM [H]

Synonym: AM1_3046

Alternate gene names: 158336184

Gene position: 3070756-3071346 (Clockwise)

Preceding gene: 158336182

Following gene: 158336194

Centisome position: 47.22

GC content: 48.56

Gene sequence:

>591_bases
TTGACACTCGGCCCGATCACGGGGGTTGTTTCAACCCTTGTTCCCTTTCATCGCGTATTACAACAGAGGCTCACATCCTT
ACAGGATGAACGAGCGCTCATGCAAATACTTTCAGAAAGAGATTCACTCACTCAACTTTACAATCGCCGTGTGGCCGAAG
AGTTTCTCTCTACCTGTGTAGCGGATGCAGCTTCCAAGAGTGGGGTGATTTTATTTGATATCGATCATTTCAAACGCATC
AACGATACTTACGGACATCAGGCGGGCGATATTGTCTTGGTAGCCGTAGCAATGCGCTGTAGCCAAGTTTTGCGCAAGAC
TGATTGCCTTGCCCGTTGGGGAGGCGAAGAGTTTTTCGTCGTATTGCAGCATGTTGGGGCTGAAGCGATCGAACGGATTG
CGGAGGAGTTACGACTAGCCATTGCCTCGGAAGAGATTGAACCCGCAGGCAGTGTCACAGCATCGTTCGGTGTGAGTTTG
ATAAAGTCCAATGACACCATTGGAAGCTTATTACAGCGGGTAGATAAAGCAATGTACGCGGCTAAAACAAGTGGGCGCAA
TCGCGTAATGACTGATAAGTCCTTGAGTTAA

Upstream 100 bases:

>100_bases
CACTGCTGTTGTGGTTTGGCTTGTCGTCTCCTTACCTGTTCTGGTCTATCTGATAGCTCACCCGACCGAGCTCTGGAGTC
CTCGCGGCATGGAAATGGCT

Downstream 100 bases:

>100_bases
CAGCAATCACAAGGGAATTAACAGACTGCTACAATCACTGCGATGTCTGCATTGAGTGATAAAGGGGTATGGCAACGATT
CAATGCCCATCCCACCGACC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTLGPITGVVSTLVPFHRVLQQRLTSLQDERALMQILSERDSLTQLYNRRVAEEFLSTCVADAASKSGVILFDIDHFKRI
NDTYGHQAGDIVLVAVAMRCSQVLRKTDCLARWGGEEFFVVLQHVGAEAIERIAEELRLAIASEEIEPAGSVTASFGVSL
IKSNDTIGSLLQRVDKAMYAAKTSGRNRVMTDKSLS

Sequences:

>Translated_196_residues
MTLGPITGVVSTLVPFHRVLQQRLTSLQDERALMQILSERDSLTQLYNRRVAEEFLSTCVADAASKSGVILFDIDHFKRI
NDTYGHQAGDIVLVAVAMRCSQVLRKTDCLARWGGEEFFVVLQHVGAEAIERIAEELRLAIASEEIEPAGSVTASFGVSL
IKSNDTIGSLLQRVDKAMYAAKTSGRNRVMTDKSLS
>Mature_195_residues
TLGPITGVVSTLVPFHRVLQQRLTSLQDERALMQILSERDSLTQLYNRRVAEEFLSTCVADAASKSGVILFDIDHFKRIN
DTYGHQAGDIVLVAVAMRCSQVLRKTDCLARWGGEEFFVVLQHVGAEAIERIAEELRLAIASEEIEPAGSVTASFGVSLI
KSNDTIGSLLQRVDKAMYAAKTSGRNRVMTDKSLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=37.3056994818653, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=33.7579617834395, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=36.0248447204969, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=38.3233532934132, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.9506172839506, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1787541, Length=158, Percent_Identity=34.1772151898734, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=30.9677419354839, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=32.9608938547486, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788381, Length=159, Percent_Identity=33.9622641509434, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=33.1325301204819, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=30.8641975308642, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787056, Length=182, Percent_Identity=32.967032967033, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 21571; Mature: 21440

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGPITGVVSTLVPFHRVLQQRLTSLQDERALMQILSERDSLTQLYNRRVAEEFLSTCV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADAASKSGVILFDIDHFKRINDTYGHQAGDIVLVAVAMRCSQVLRKTDCLARWGGEEFFV
HHHCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VLQHVGAEAIERIAEELRLAIASEEIEPAGSVTASFGVSLIKSNDTIGSLLQRVDKAMYA
HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AKTSGRNRVMTDKSLS
HHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLGPITGVVSTLVPFHRVLQQRLTSLQDERALMQILSERDSLTQLYNRRVAEEFLSTCV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADAASKSGVILFDIDHFKRINDTYGHQAGDIVLVAVAMRCSQVLRKTDCLARWGGEEFFV
HHHCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VLQHVGAEAIERIAEELRLAIASEEIEPAGSVTASFGVSLIKSNDTIGSLLQRVDKAMYA
HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AKTSGRNRVMTDKSLS
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]