| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is uidR [C]
Identifier: 158335929
GI number: 158335929
Start: 2819109
End: 2819735
Strand: Direct
Name: uidR [C]
Synonym: AM1_2787
Alternate gene names: 158335929
Gene position: 2819109-2819735 (Clockwise)
Preceding gene: 158335926
Following gene: 158335931
Centisome position: 43.35
GC content: 46.09
Gene sequence:
>627_bases ATGAGTCCCAAAATTGTTGACCGAGAAGCTAAACGCCAAGCGATTCTGGCTGCTGCGATCGCAGTCTTCGCCGAAAAAGG GTATCACGCCACCAAAATGGCCGACATTGCCCGCAAAGCTGAGATGGGCAAAGGTACCCTTTATGAGTATTTCCGCACCA AGGAAGAACTGCCCAAAAGCATTTTTGGCCTGATGCTCGAAGCATTCGATCAGGAAATTTCGCAACTAGAGCAGGCCCAT GCTGATCCTGTAGACGCCATCATGGCCGGGATTCAACTCTGTTTTCAGGATCTGGATGAATTTGCTTATGTCACTCCTTT AGTCTTCGAAATTCTAGGTAATAAGGATCTGGATCGATCGATTGGGTTAAGTGAAGATTTTAAACAATGGCTGGAGGGCA TCAATCAGTTCTTTATTGCTCAGATTCAAGCCGGTCAAGCTCAAGGGAAGATCTCGTCAAAGCTCTCTGCCCCAATTTTT GCCCGCATGCTAGTGAGCATCTTAGATGGCATGGCAACCCATTATTGTATGTTTCACTTTCAACCTGATTTTTTTATGGC TCAGGTTAAAGCCTTGGAGGATATGGTGTGCTCCTATCTAGTCTCCTCAATCGGGGACAAGCAATAA
Upstream 100 bases:
>100_bases TAGTGACGATACCTTTATATTGACCGACCAGTCGGTCAAATGTCAAGTCGAAAGATGAAAGCTCTACAGTAAAAGACGCA GGAACCGCTATGATGACGCC
Downstream 100 bases:
>100_bases CAATTAACCATATCGATTCTTTTCAGGTTGGCTTTCAGCGGCCAAGCAGAAAAGTAAGACTAGACCGCCTATCATTGGGA CAAAGTTTACAAATAGCCAC
Product: transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family Domain Protein
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MSPKIVDREAKRQAILAAAIAVFAEKGYHATKMADIARKAEMGKGTLYEYFRTKEELPKSIFGLMLEAFDQEISQLEQAH ADPVDAIMAGIQLCFQDLDEFAYVTPLVFEILGNKDLDRSIGLSEDFKQWLEGINQFFIAQIQAGQAQGKISSKLSAPIF ARMLVSILDGMATHYCMFHFQPDFFMAQVKALEDMVCSYLVSSIGDKQ
Sequences:
>Translated_208_residues MSPKIVDREAKRQAILAAAIAVFAEKGYHATKMADIARKAEMGKGTLYEYFRTKEELPKSIFGLMLEAFDQEISQLEQAH ADPVDAIMAGIQLCFQDLDEFAYVTPLVFEILGNKDLDRSIGLSEDFKQWLEGINQFFIAQIQAGQAQGKISSKLSAPIF ARMLVSILDGMATHYCMFHFQPDFFMAQVKALEDMVCSYLVSSIGDKQ >Mature_207_residues SPKIVDREAKRQAILAAAIAVFAEKGYHATKMADIARKAEMGKGTLYEYFRTKEELPKSIFGLMLEAFDQEISQLEQAHA DPVDAIMAGIQLCFQDLDEFAYVTPLVFEILGNKDLDRSIGLSEDFKQWLEGINQFFIAQIQAGQAQGKISSKLSAPIFA RMLVSILDGMATHYCMFHFQPDFFMAQVKALEDMVCSYLVSSIGDKQ
Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23309; Mature: 23178
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPKIVDREAKRQAILAAAIAVFAEKGYHATKMADIARKAEMGKGTLYEYFRTKEELPKS CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH IFGLMLEAFDQEISQLEQAHADPVDAIMAGIQLCFQDLDEFAYVTPLVFEILGNKDLDRS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH IGLSEDFKQWLEGINQFFIAQIQAGQAQGKISSKLSAPIFARMLVSILDGMATHYCMFHF CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QPDFFMAQVKALEDMVCSYLVSSIGDKQ CCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SPKIVDREAKRQAILAAAIAVFAEKGYHATKMADIARKAEMGKGTLYEYFRTKEELPKS CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH IFGLMLEAFDQEISQLEQAHADPVDAIMAGIQLCFQDLDEFAYVTPLVFEILGNKDLDRS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH IGLSEDFKQWLEGINQFFIAQIQAGQAQGKISSKLSAPIFARMLVSILDGMATHYCMFHF CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QPDFFMAQVKALEDMVCSYLVSSIGDKQ CCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA