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The map label for this gene is ybiA [H]

Identifier: 158335874

GI number: 158335874

Start: 2766774

End: 2767244

Strand: Reverse

Name: ybiA [H]

Synonym: AM1_2731

Alternate gene names: 158335874

Gene position: 2767244-2766774 (Counterclockwise)

Preceding gene: 158335880

Following gene: 158335871

Centisome position: 42.55

GC content: 47.56

Gene sequence:

>471_bases
ATGACCATTTTTTTCTACAAAGTCCAGGATCCTTACGGATGTTTTTCCAATTTTTCACTTCATAGTATTGACCTGCAAGG
ACAGACCTGGCCGACCTCAGAACATTACTATCAAGCCCAAAAATACCAAGGTACGCCCCACCAAGCCTTATGCGACAAGA
TTCGACAGGCATCGACCCCTGAAGCTGCAGCAGCTCTGGGTCGTAATCCCCTCTATACCGAGCAGGCTGATTGGGATGTG
ATCAAGCCTGAGATTATGTATGCTGCCGTGCGCACTAAATTCTTGACCCATCCGACGATTCAGGCGGAACTGTTATCCAC
GGGGGATGAATTGATTGTTGAAAATTCGCCTTTAGATCCCTATTGGGGATGTGGTGCAGATGGTAAAGGGCAGAACCAGC
TGGGAAAAATCTTAATGCAAGTTCGCCAAGAGATTCGCCAGTTGATTCAAACCGGGGCGATTAGTGTGTGA

Upstream 100 bases:

>100_bases
TTTCCAGGGTGAACTTGGCCAGCTTTGGAGAAAAGAACGTCCTTGCTAAGTCAGGTTTGCTGTCATCATAGAAAGAGATA
GTCGGGTAAGTTAGCTGAGG

Downstream 100 bases:

>100_bases
CGCTAGCGACCATTGCTGGGGCCAGATTGTTGACCACCCGCTGATCCGGCAAAATGGTGCGAGATAAAATGGCGTCTTGC
AGTCTCTGTAGCTGCACTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTIFFYKVQDPYGCFSNFSLHSIDLQGQTWPTSEHYYQAQKYQGTPHQALCDKIRQASTPEAAAALGRNPLYTEQADWDV
IKPEIMYAAVRTKFLTHPTIQAELLSTGDELIVENSPLDPYWGCGADGKGQNQLGKILMQVRQEIRQLIQTGAISV

Sequences:

>Translated_156_residues
MTIFFYKVQDPYGCFSNFSLHSIDLQGQTWPTSEHYYQAQKYQGTPHQALCDKIRQASTPEAAAALGRNPLYTEQADWDV
IKPEIMYAAVRTKFLTHPTIQAELLSTGDELIVENSPLDPYWGCGADGKGQNQLGKILMQVRQEIRQLIQTGAISV
>Mature_155_residues
TIFFYKVQDPYGCFSNFSLHSIDLQGQTWPTSEHYYQAQKYQGTPHQALCDKIRQASTPEAAAALGRNPLYTEQADWDVI
KPEIMYAAVRTKFLTHPTIQAELLSTGDELIVENSPLDPYWGCGADGKGQNQLGKILMQVRQEIRQLIQTGAISV

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=143, Percent_Identity=41.958041958042, Blast_Score=129, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 17553; Mature: 17422

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFFYKVQDPYGCFSNFSLHSIDLQGQTWPTSEHYYQAQKYQGTPHQALCDKIRQASTP
CEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
EAAAALGRNPLYTEQADWDVIKPEIMYAAVRTKFLTHPTIQAELLSTGDELIVENSPLDP
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCC
YWGCGADGKGQNQLGKILMQVRQEIRQLIQTGAISV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TIFFYKVQDPYGCFSNFSLHSIDLQGQTWPTSEHYYQAQKYQGTPHQALCDKIRQASTP
EEEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
EAAAALGRNPLYTEQADWDVIKPEIMYAAVRTKFLTHPTIQAELLSTGDELIVENSPLDP
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCC
YWGCGADGKGQNQLGKILMQVRQEIRQLIQTGAISV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]