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The map label for this gene is comF [H]

Identifier: 158335498

GI number: 158335498

Start: 2348881

End: 2349384

Strand: Reverse

Name: comF [H]

Synonym: AM1_2345

Alternate gene names: 158335498

Gene position: 2349384-2348881 (Counterclockwise)

Preceding gene: 158335501

Following gene: 158335496

Centisome position: 36.12

GC content: 46.83

Gene sequence:

>504_bases
ATGCTACCGCTTCTCGCATGGGGGCATTATCAAGGGCCGCTGAAGCAATTATTGGGTCGTCTCAAGTATGACCAACAAGC
TCAAGTTGCTCGTCTTTTAGGGCAACTTCTGGGAGTCACTTGGCTAGAAACTCAGTCTCACCATCGACAACCTATCGTTG
TCCCTATTCCACTTCACAAAGTCAGGCAGAGGGAGCGGGGATACAATCAATCAGCGCTAATTGCCAATAGTTTTTGCCAA
TTTACAGGCTTAAACGTGATGCTCAACGGTTTGGTGAGAGTACGGGCAACAGCAGCTCAATTTAGCTTGTCTCCACAAGA
CCGTCTTACTAATGTATCTGAAGCTTTTCGAGTAGGCCCTGAGCTAGCACAGAAAAGCCGTGGAAGTAAGATTGTGCTGC
TTGATGACATTTATACGACGGGTGCAACCATTAACTCAGCCGTTGAAACGTTAAGCCAAGCAGGCTTTCAAGTGGTAGAA
ATTGTGGTGGTGGCTAAAGCTTAA

Upstream 100 bases:

>100_bases
CTGTGCGATGTGTCAGCGACTTTCATTTGGACTTATATGTCCAGATTGCCGTCGTCAGCTAGAAACTTGCCAGTTAGCAA
TTCCACTCGCCTTTGTGGAT

Downstream 100 bases:

>100_bases
CCCAGTTGACCGACGAGATATGCAGTTTCTAGACTCCAGCCAATCAAGAGGCCGATGCTGCCAAAAATGATGATGGCTGA
TAGGGCGACCGTAATGGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLPLLAWGHYQGPLKQLLGRLKYDQQAQVARLLGQLLGVTWLETQSHHRQPIVVPIPLHKVRQRERGYNQSALIANSFCQ
FTGLNVMLNGLVRVRATAAQFSLSPQDRLTNVSEAFRVGPELAQKSRGSKIVLLDDIYTTGATINSAVETLSQAGFQVVE
IVVVAKA

Sequences:

>Translated_167_residues
MLPLLAWGHYQGPLKQLLGRLKYDQQAQVARLLGQLLGVTWLETQSHHRQPIVVPIPLHKVRQRERGYNQSALIANSFCQ
FTGLNVMLNGLVRVRATAAQFSLSPQDRLTNVSEAFRVGPELAQKSRGSKIVLLDDIYTTGATINSAVETLSQAGFQVVE
IVVVAKA
>Mature_167_residues
MLPLLAWGHYQGPLKQLLGRLKYDQQAQVARLLGQLLGVTWLETQSHHRQPIVVPIPLHKVRQRERGYNQSALIANSFCQ
FTGLNVMLNGLVRVRATAAQFSLSPQDRLTNVSEAFRVGPELAQKSRGSKIVLLDDIYTTGATINSAVETLSQAGFQVVE
IVVVAKA

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=164, Percent_Identity=29.2682926829268, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 18442; Mature: 18442

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLLAWGHYQGPLKQLLGRLKYDQQAQVARLLGQLLGVTWLETQSHHRQPIVVPIPLHK
CCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHH
VRQRERGYNQSALIANSFCQFTGLNVMLNGLVRVRATAAQFSLSPQDRLTNVSEAFRVGP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH
ELAQKSRGSKIVLLDDIYTTGATINSAVETLSQAGFQVVEIVVVAKA
HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHEEHEEEEECC
>Mature Secondary Structure
MLPLLAWGHYQGPLKQLLGRLKYDQQAQVARLLGQLLGVTWLETQSHHRQPIVVPIPLHK
CCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHH
VRQRERGYNQSALIANSFCQFTGLNVMLNGLVRVRATAAQFSLSPQDRLTNVSEAFRVGP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH
ELAQKSRGSKIVLLDDIYTTGATINSAVETLSQAGFQVVEIVVVAKA
HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHEEHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]