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The map label for this gene is ygcF [C]

Identifier: 158335495

GI number: 158335495

Start: 2346751

End: 2347521

Strand: Reverse

Name: ygcF [C]

Synonym: AM1_2342

Alternate gene names: 158335495

Gene position: 2347521-2346751 (Counterclockwise)

Preceding gene: 158335496

Following gene: 158335491

Centisome position: 36.1

GC content: 50.58

Gene sequence:

>771_bases
ATGAAAACTGCATCCACCGCCAACTTAGTTGAGATTTTTTCTGCCATTCAAGGGGAAGGGCTTAATGTCGGCACCCGCCA
AATTTTTATTCGCTTTGGGGGGTGTGATCTCCGCTGCCATTTCTGCGATAGTGCCCATACCTGGACCCCAAAAAGCAGCT
GTCAAATTGAAAAAACGCCGGGCTGTCGCGATTTTGCCCGCTATCCAAATCCAGTGACCCTTCCCCAGATCCTAGAGTGG
GTTCAAGATCAGGATCTGCCTGGGATGCATGACAGTATCAGCTTGACTGGCGGAGAACCCCTATTACAGGTGGCGTTCTT
ACAGAATTTGTTGCCTTTGCTGCGGCAACAGACCTCGTTACCCATTTACTTAGAAACGGGCGGCCATCATCCTGAAGCCC
TCGATCCGCTGTTGCCCCACCTGGATAGTGTGGGTATGGATCTGAAGTTACCGAGTGTGAGTGGTGAAAACCATTGGCCT
CAGCATCGTCAAAGCTTGGAATTATGTCATCAAGCCCATATCGATGTATTTTGTAAGCTCATTATTAGCGAAAAAACTGA
TTGGCCGGAGTTGGTTCAAGCCGCCCAGATGGTTGCTGATATTAGCCCTACGGTATTGATGTTCTTACAACCCGTGACAC
CCTTAACGGCGCAACACCCCGTCCAGCCACCCACCCCCGATCAAGTTTTGGCCTGGCAAGGGCAGCTCAAACAGATGGGG
CGACAGATTAGGGTTGTGCCCCAAACCCATAAGTTTCTGGGGCAGCTTTAA

Upstream 100 bases:

>100_bases
TCGGTTTATCCGATCCCCTATCCTATGCCACCTAACCGCAACATCGACCTCTATTTTCCTCCGATGGGGTTGATCGCCAC
TCCCCTAAGCATTTGCCTTT

Downstream 100 bases:

>100_bases
GCCGTTTTCCCCCGCAACCAGTTTTTCAGGTCTTCTTCATTATTGAAATCTAAGAGGGCTTCACCCAAATCTTCCACTTG
ATTAACCGGCAAGCTACGGA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKTASTANLVEIFSAIQGEGLNVGTRQIFIRFGGCDLRCHFCDSAHTWTPKSSCQIEKTPGCRDFARYPNPVTLPQILEW
VQDQDLPGMHDSISLTGGEPLLQVAFLQNLLPLLRQQTSLPIYLETGGHHPEALDPLLPHLDSVGMDLKLPSVSGENHWP
QHRQSLELCHQAHIDVFCKLIISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTPDQVLAWQGQLKQMG
RQIRVVPQTHKFLGQL

Sequences:

>Translated_256_residues
MKTASTANLVEIFSAIQGEGLNVGTRQIFIRFGGCDLRCHFCDSAHTWTPKSSCQIEKTPGCRDFARYPNPVTLPQILEW
VQDQDLPGMHDSISLTGGEPLLQVAFLQNLLPLLRQQTSLPIYLETGGHHPEALDPLLPHLDSVGMDLKLPSVSGENHWP
QHRQSLELCHQAHIDVFCKLIISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTPDQVLAWQGQLKQMG
RQIRVVPQTHKFLGQL
>Mature_256_residues
MKTASTANLVEIFSAIQGEGLNVGTRQIFIRFGGCDLRCHFCDSAHTWTPKSSCQIEKTPGCRDFARYPNPVTLPQILEW
VQDQDLPGMHDSISLTGGEPLLQVAFLQNLLPLLRQQTSLPIYLETGGHHPEALDPLLPHLDSVGMDLKLPSVSGENHWP
QHRQSLELCHQAHIDVFCKLIISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTPDQVLAWQGQLKQMG
RQIRVVPQTHKFLGQL

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 28575; Mature: 28575

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTASTANLVEIFSAIQGEGLNVGTRQIFIRFGGCDLRCHFCDSAHTWTPKSSCQIEKTP
CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCC
GCRDFARYPNPVTLPQILEWVQDQDLPGMHDSISLTGGEPLLQVAFLQNLLPLLRQQTSL
CCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCC
PIYLETGGHHPEALDPLLPHLDSVGMDLKLPSVSGENHWPQHRQSLELCHQAHIDVFCKL
CEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTPDQVLAWQGQLKQMG
HHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
RQIRVVPQTHKFLGQL
HHEEECCHHHHHHCCC
>Mature Secondary Structure
MKTASTANLVEIFSAIQGEGLNVGTRQIFIRFGGCDLRCHFCDSAHTWTPKSSCQIEKTP
CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCC
GCRDFARYPNPVTLPQILEWVQDQDLPGMHDSISLTGGEPLLQVAFLQNLLPLLRQQTSL
CCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCC
PIYLETGGHHPEALDPLLPHLDSVGMDLKLPSVSGENHWPQHRQSLELCHQAHIDVFCKL
CEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTPDQVLAWQGQLKQMG
HHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
RQIRVVPQTHKFLGQL
HHEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]