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The map label for this gene is ygjM [C]

Identifier: 158335256

GI number: 158335256

Start: 2088785

End: 2089162

Strand: Reverse

Name: ygjM [C]

Synonym: AM1_2099

Alternate gene names: 158335256

Gene position: 2089162-2088785 (Counterclockwise)

Preceding gene: 158335257

Following gene: 158335255

Centisome position: 32.12

GC content: 42.33

Gene sequence:

>378_bases
ATGGAAATTTGCCCAATTAGAACTAAGGCTGATTATCAAGCAGCATTGAAAGAAATTGAGATGCTGTTTGATGCTCCACC
CAATACCCCTGCATATGATCGACTGGATATACTCAGTACACTAGTAGAAGCTTATGAGGAAAGGCATTTCCCGATTGAAG
CGCCTGATCCAATTGAAGCCATTCTCTACTACATGGATACTCGTGGTTTATCTCGTCGAGACTTAGAACCTTGCCTGGGT
AGTCGAGCAAGGGTGTCAGAAATACTATCTCGAAAGCGCTCATTAACATTAGAGATGATTCGGAAACTAAATCAAAATCT
GGGGATTCCTGCTGAAGTCCTGATTCAGTCATATAGCTCAATGCAAACTCCTGCCTAA

Upstream 100 bases:

>100_bases
CAATTCGCTACGATATCAGCATTATTTTTATTCGATTCGTTGGCACTCATGCAGAGTACGACAAAGTAGATGCAGAAACG
GTTTAAAGATAGGAATAGGT

Downstream 100 bases:

>100_bases
CCAGCACTTGCATAGGATAATCGACATACCATGATGCGCGTTGTCTTTGATCTGCAACCTGTTGAACGCAGTTCGTTAGA
GGCTGTTTGAGAAGTGAGTA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcription Regulator With HTH Domain; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; Transcription Regulator; Transcription Regulator With HTH Domain Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Xre Family; Transcription Regulator Containing HTH Domain; Transcription Regulator Protein; Transcritional Regulatior Protein; Transcription Regulator Containing Helix Turn Helix Domain; HTH_3 Family Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator YgjM; Transcriptional Regulator Protein; Transcription Regulator With HTH Domain-Containing Protein

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MEICPIRTKADYQAALKEIEMLFDAPPNTPAYDRLDILSTLVEAYEERHFPIEAPDPIEAILYYMDTRGLSRRDLEPCLG
SRARVSEILSRKRSLTLEMIRKLNQNLGIPAEVLIQSYSSMQTPA

Sequences:

>Translated_125_residues
MEICPIRTKADYQAALKEIEMLFDAPPNTPAYDRLDILSTLVEAYEERHFPIEAPDPIEAILYYMDTRGLSRRDLEPCLG
SRARVSEILSRKRSLTLEMIRKLNQNLGIPAEVLIQSYSSMQTPA
>Mature_125_residues
MEICPIRTKADYQAALKEIEMLFDAPPNTPAYDRLDILSTLVEAYEERHFPIEAPDPIEAILYYMDTRGLSRRDLEPCLG
SRARVSEILSRKRSLTLEMIRKLNQNLGIPAEVLIQSYSSMQTPA

Specific function: Unknown

COG id: COG5499

COG function: function code K; Predicted transcription regulator containing HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14286; Mature: 14286

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEICPIRTKADYQAALKEIEMLFDAPPNTPAYDRLDILSTLVEAYEERHFPIEAPDPIEA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ILYYMDTRGLSRRDLEPCLGSRARVSEILSRKRSLTLEMIRKLNQNLGIPAEVLIQSYSS
HHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
MQTPA
CCCCC
>Mature Secondary Structure
MEICPIRTKADYQAALKEIEMLFDAPPNTPAYDRLDILSTLVEAYEERHFPIEAPDPIEA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ILYYMDTRGLSRRDLEPCLGSRARVSEILSRKRSLTLEMIRKLNQNLGIPAEVLIQSYSS
HHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
MQTPA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA