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The map label for this gene is rimM

Identifier: 158335184

GI number: 158335184

Start: 2018204

End: 2018782

Strand: Reverse

Name: rimM

Synonym: AM1_2027

Alternate gene names: 158335184

Gene position: 2018782-2018204 (Counterclockwise)

Preceding gene: 158335185

Following gene: 158335182

Centisome position: 31.04

GC content: 45.42

Gene sequence:

>579_bases
ATGCCGGTGAGTGACTCCCTTTCCCCAGATTTACCCAATGATGACACTTCAGAAGAATGGTTAGAAGTTGGCACCATCGT
AGGTGCCCATGGATTAAATGGGGAGGTTAAAGTTTATCCAGATTCAGACTTTCCTGAGCGCTTTACCCAGCCGGGCCTCC
GCTGGCTAGTATCCCCTACCGAAGCATCGACTCCAGAAGAGATTCAACTTATCAGAGGTCGCTTTGTTGAACGTAAAGGG
ATTTATGTTGTTAAATTGGCCAACGTCAACTTTAGAGATCAATCCGAAGCTCTAAAAGGAACCAAACTTCTCGTTCGCAG
CAATGATCGCCCCACCTTGGCAGAGGGCGAATATTATCTGTCTGATTTGATCGGAGTAACAGTTGTTGATCACCAAACCC
AAGCAGTCGTAGGTTCAGTCGTTAGCCTTGCCAGTGCAGGCAATGATCTGCTGGAAATCCAACTTGACAACACTACAAAA
ACGATTCTGCTACCATTTGTCTCAGCTCTAGTCCCTATTGTAGATATAGCGACTAAACGCATAGAAATCACTCCTCCTAA
AGGATTGATTCCTGAATAA

Upstream 100 bases:

>100_bases
ATCACCATCGCCATGCAGCGACTTGTTCCAGTCATTGAAGAAGTGTACCGAAGCAACAACGCATAATGAGGCCCCTCCAG
CTCATTTCAACTTAAAGGAT

Downstream 100 bases:

>100_bases
AGTCAGTTGATGCAAAAAACCGCCTTCACAAGAAAGCGGTTTTTATCATTGAACTTATTGAACTAGCCTAAATGCAGCTA
GTACTCTAGAAGCTCGATCA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MPVSDSLSPDLPNDDTSEEWLEVGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPTEASTPEEIQLIRGRFVERKG
IYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYLSDLIGVTVVDHQTQAVVGSVVSLASAGNDLLEIQLDNTTK
TILLPFVSALVPIVDIATKRIEITPPKGLIPE

Sequences:

>Translated_192_residues
MPVSDSLSPDLPNDDTSEEWLEVGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPTEASTPEEIQLIRGRFVERKG
IYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYLSDLIGVTVVDHQTQAVVGSVVSLASAGNDLLEIQLDNTTK
TILLPFVSALVPIVDIATKRIEITPPKGLIPE
>Mature_191_residues
PVSDSLSPDLPNDDTSEEWLEVGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPTEASTPEEIQLIRGRFVERKGI
YVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYLSDLIGVTVVDHQTQAVVGSVVSLASAGNDLLEIQLDNTTKT
ILLPFVSALVPIVDIATKRIEITPPKGLIPE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ACAM1 (B0CFM3)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001516356.1
- ProteinModelPortal:   B0CFM3
- SMR:   B0CFM3
- GeneID:   5680841
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_2027
- HOGENOM:   HBG703775
- OMA:   YPDSDFP
- BioCyc:   AMAR329726:AM1_2027-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20992; Mature: 20861

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSDSLSPDLPNDDTSEEWLEVGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPT
CCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCEEEEECCCCCHHHHCCCCCEEEECCC
EASTPEEIQLIRGRFVERKGIYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYL
CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCEEEEEECCCCCCEECCHHHH
SDLIGVTVVDHQTQAVVGSVVSLASAGNDLLEIQLDNTTKTILLPFVSALVPIVDIATKR
HHHHEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCE
IEITPPKGLIPE
EEECCCCCCCCC
>Mature Secondary Structure 
PVSDSLSPDLPNDDTSEEWLEVGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPT
CCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCEEEEECCCCCHHHHCCCCCEEEECCC
EASTPEEIQLIRGRFVERKGIYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYL
CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCEEEEEECCCCCCEECCHHHH
SDLIGVTVVDHQTQAVVGSVVSLASAGNDLLEIQLDNTTKTILLPFVSALVPIVDIATKR
HHHHEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCE
IEITPPKGLIPE
EEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA