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The map label for this gene is ycdM [C]

Identifier: 158334787

GI number: 158334787

Start: 1591772

End: 1592767

Strand: Direct

Name: ycdM [C]

Synonym: AM1_1622

Alternate gene names: 158334787

Gene position: 1591772-1592767 (Clockwise)

Preceding gene: 158334786

Following gene: 158334788

Centisome position: 24.47

GC content: 55.52

Gene sequence:

>996_bases
ATGAACACAGAATGCAAGACCCTCAAGCCTGTGGAAGATACCGGGTTTCAACCCATTAATCGGGCCTACAACACCGTATT
CCGTCCCAATCGATTAAGCCTCGGCCTCGTGGTGCCGATCGAGACCTATGCAAAGGGACCCGTGCCCACCCTGGAACGTC
ATCTTGAACGGGTTCAGCTAGCCGAAGCCCTCGGGTTTGCAGCGGTGTGGTTACGGGATGTGCCCTTCAACGTGCCCTCC
TTTGGGGATGCCGGGCAGACCTACGACCCGTTTGTGTATCTAGGGCTATTGGCAGGCCAAACCCAGCGCATCGCCCTCGG
GGTGGCCAGTATCATTCTGCCCTTACGACATCCAGCCCATGTGGCTAAAGCCGCCGCAACTATTGATGTGATGTCAGGAG
GACGGCTAATTCTGGGGGTGGCTTCGGGAGATCGCCCCGAGGAGTATCCAGCCCTCAACCGCTCTTTTAGTGATCGTGGA
GCAACGTTTAGAGAGAGCTTTGACTACATCCGGCAGATGGGTCAAGCATCTCCCACCTTTGATAATGCGTTTGGTCACTT
GACGGGTGGGATGGATATGCTGCCCAAACCCACCTCAGGCAAACTGCCCCTCCTGATTACGGGAGGCAGTCAGCAAGCCC
CCGATTGGATTGCCCAGAACGGGGACGGCTGGATGACCTATCCCCGCGATACGGTGATGCAAGCACGCGTCATTCGCGAT
TGGCAGGCTCGGGTGGAGGCGATTGGTGGTGCTAACAAACCGATCATGCAGCCGCTGTATATAGATCTAACCGAAGACCC
CGATACCCGGCCCCAACCGATCCATCTGGGATTCCGGCTAGGCGTAAACCATCTGCGGGCCTATCTCAAATCCCTGGAAC
AAATCGGCATGAACCATGTGGCGCTGAACTTGCGATTTAACCAAGCAGATATCGAGACAACGCTAAAACGTCTAGCCGAC
GATATCTTGCCAGAATTTACGGTCTGCAGTGATTAA

Upstream 100 bases:

>100_bases
TAAAGCGCTTTACCTGGGCAGATGAGAACGGGGCCCAGTTCGATATGAACAACCAACACAATTGGCAAGAAATGGTCATT
AGTGTGCAGGAGATCCAATA

Downstream 100 bases:

>100_bases
GGAAGCCAAAACCATGACAAAAACGATTTTAATTACTGGTTCTACTGATGGTATCGGTTTAGAAACAGCCAAACTATTGG
TTTCAGAAGGTCACAGAGTG

Product: luciferase-like monooxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNTECKTLKPVEDTGFQPINRAYNTVFRPNRLSLGLVVPIETYAKGPVPTLERHLERVQLAEALGFAAVWLRDVPFNVPS
FGDAGQTYDPFVYLGLLAGQTQRIALGVASIILPLRHPAHVAKAAATIDVMSGGRLILGVASGDRPEEYPALNRSFSDRG
ATFRESFDYIRQMGQASPTFDNAFGHLTGGMDMLPKPTSGKLPLLITGGSQQAPDWIAQNGDGWMTYPRDTVMQARVIRD
WQARVEAIGGANKPIMQPLYIDLTEDPDTRPQPIHLGFRLGVNHLRAYLKSLEQIGMNHVALNLRFNQADIETTLKRLAD
DILPEFTVCSD

Sequences:

>Translated_331_residues
MNTECKTLKPVEDTGFQPINRAYNTVFRPNRLSLGLVVPIETYAKGPVPTLERHLERVQLAEALGFAAVWLRDVPFNVPS
FGDAGQTYDPFVYLGLLAGQTQRIALGVASIILPLRHPAHVAKAAATIDVMSGGRLILGVASGDRPEEYPALNRSFSDRG
ATFRESFDYIRQMGQASPTFDNAFGHLTGGMDMLPKPTSGKLPLLITGGSQQAPDWIAQNGDGWMTYPRDTVMQARVIRD
WQARVEAIGGANKPIMQPLYIDLTEDPDTRPQPIHLGFRLGVNHLRAYLKSLEQIGMNHVALNLRFNQADIETTLKRLAD
DILPEFTVCSD
>Mature_331_residues
MNTECKTLKPVEDTGFQPINRAYNTVFRPNRLSLGLVVPIETYAKGPVPTLERHLERVQLAEALGFAAVWLRDVPFNVPS
FGDAGQTYDPFVYLGLLAGQTQRIALGVASIILPLRHPAHVAKAAATIDVMSGGRLILGVASGDRPEEYPALNRSFSDRG
ATFRESFDYIRQMGQASPTFDNAFGHLTGGMDMLPKPTSGKLPLLITGGSQQAPDWIAQNGDGWMTYPRDTVMQARVIRD
WQARVEAIGGANKPIMQPLYIDLTEDPDTRPQPIHLGFRLGVNHLRAYLKSLEQIGMNHVALNLRFNQADIETTLKRLAD
DILPEFTVCSD

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 36536; Mature: 36536

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTECKTLKPVEDTGFQPINRAYNTVFRPNRLSLGLVVPIETYAKGPVPTLERHLERVQL
CCCCCCCCCCCHHCCCCHHHHHHHHHCCCCCEEEEEEEEHHHHCCCCCHHHHHHHHHHHH
AEALGFAAVWLRDVPFNVPSFGDAGQTYDPFVYLGLLAGQTQRIALGVASIILPLRHPAH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEHHHCCCCHHHHHHHHHHHHHCCCHHH
VAKAAATIDVMSGGRLILGVASGDRPEEYPALNRSFSDRGATFRESFDYIRQMGQASPTF
HHHHHHHEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
DNAFGHLTGGMDMLPKPTSGKLPLLITGGSQQAPDWIAQNGDGWMTYPRDTVMQARVIRD
HHCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHH
WQARVEAIGGANKPIMQPLYIDLTEDPDTRPQPIHLGFRLGVNHLRAYLKSLEQIGMNHV
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEHHHHCHHHHHHHHHHHHHCCCCEE
ALNLRFNQADIETTLKRLADDILPEFTVCSD
EEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNTECKTLKPVEDTGFQPINRAYNTVFRPNRLSLGLVVPIETYAKGPVPTLERHLERVQL
CCCCCCCCCCCHHCCCCHHHHHHHHHCCCCCEEEEEEEEHHHHCCCCCHHHHHHHHHHHH
AEALGFAAVWLRDVPFNVPSFGDAGQTYDPFVYLGLLAGQTQRIALGVASIILPLRHPAH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEHHHCCCCHHHHHHHHHHHHHCCCHHH
VAKAAATIDVMSGGRLILGVASGDRPEEYPALNRSFSDRGATFRESFDYIRQMGQASPTF
HHHHHHHEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
DNAFGHLTGGMDMLPKPTSGKLPLLITGGSQQAPDWIAQNGDGWMTYPRDTVMQARVIRD
HHCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHH
WQARVEAIGGANKPIMQPLYIDLTEDPDTRPQPIHLGFRLGVNHLRAYLKSLEQIGMNHV
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEHHHHCHHHHHHHHHHHHHCCCCEE
ALNLRFNQADIETTLKRLADDILPEFTVCSD
EEEEEECHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]