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The map label for this gene is ltrA

Identifier: 158334496

GI number: 158334496

Start: 1305333

End: 1306520

Strand: Direct

Name: ltrA

Synonym: AM1_1320

Alternate gene names: NA

Gene position: 1305333-1306520 (Clockwise)

Preceding gene: 158334493

Following gene: 158334498

Centisome position: 20.07

GC content: 54.12

Gene sequence:

>1188_bases
ATGTCTTTCCTCTTCAAGCGACACCTGCGCCCACTGTTGGCCCGAGACCGCGATCAAACCCATCGCGCCGCCACTCAGTT
GGAATTGTTGTTTGATCTGGTGGTGGTCATTGCGATCGCGGCGGCTGCACATGGATTGAGTCACACCATCGAGATCGGTC
AACCGTTACTGGGCAGTTTGCAATACGGCTTGGCCTTCTTTGCCATTTGGTGGCCCTGGAATCTGTTTACCTTTTTTGCC
AGTAGCTTTGACAATGACGATGCGGCCTATCGCCTGAGTGTGATGGTGATGATGTTTGGGGTTATGCTGGTAGCCGCCAG
TTTGCCAGTCATGTTTGAGCAGGGGCTGACTCGGTATGGCTTTTGGGGCTACATCATTTTTCGAGTGGCTTCGGCACTGC
TGTGGCTGCGGGTGGCCAGAGCTAATCCTCACCTTCGCCAAACGGCCTGGCGCTACAGCTTTGGCCAAATTTTGATTCAG
GGGGTCTGGGCGATTGGTGCGTTTTTGTTACCCGCCTGGAGCGCGGGTGCTTGGGTAATGGTGGCGATCGCAGTTTTGGG
CGAACTGCTCGTTCCCTTCTTTGCCGAAAAAGCGGGCGCAACCCCCTGGCATCGACGCCATATTATCGAGCGCTTTGGCC
TGCTTAACATCATCGTGATTGGGGAAACACTACTGAGTAGTACCCACGCCATCGGCGCTTCCATGCAGCAGGGTATGCAC
GGACCCATGCTTATTCTGGCAGGCTGCGGCGCGATCATGGGCTTTGCCCTATGGTGGCTTTACTTTTGCGATGTAGACCA
TCTTGATACGATCAGGCGGCGACGGGCCTTTGTCTGGGGCTATGGCCACTTTATTATCTTTTCGGCTGGGGCAGCTGTGG
GGTCGGGGCTGAGCGTCATGGTCTCGGCGATCTCGGCTGAGCTGTCGACAGAAACCCATACAGAAGCAGTACATGAAACG
GCTCATCAGGTTAGCCATGCAACCGCCACCTGGGCCATTGCGATTCCGCTGGCGCTCTATGTGTTGGGGATATGGCTAGT
GCGAGATCGCTACCAATTACAAAACATGCAAAGTACAACCCTACTGCTATTTTCAGTCCTGCTATTGTTGACTGGCTTTT
TACCCTATGCCCCACTGCCAGCCACGCTATTGTTAGTCCTCTGTTTAGTTTTGAGGCTGCAAAAGTAA

Upstream 100 bases:

>100_bases
CATTACTCTGCCTCTATCTACATCATCTAAATACTCTGTTTACTCTGTAATGCCAGACAGTATAGTTGAAACCGTCAATT
ACGGGTTTTAACCACCTGCC

Downstream 100 bases:

>100_bases
TACCACTGCAGGGCAGTGCCCGCGAGAAAACTGCGTCGTGTGGTCATCTTTCTATCCTTGTGTCTGTTGAAACTTGGCTC
CTGCGCCCGAAAATGGTCAG

Product: low temperature requirement protein LtrA

Products: NA

Alternate protein names: Low Temperature Requirement Protein LtrA; Integral Membrane Protein; Low Temperature Requirement Protein A; Low Temperature Requirement A Family Protein; Low Temperature Requirement Protein; Low Temperature Requirement A Protein Family Protein

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MSFLFKRHLRPLLARDRDQTHRAATQLELLFDLVVVIAIAAAAHGLSHTIEIGQPLLGSLQYGLAFFAIWWPWNLFTFFA
SSFDNDDAAYRLSVMVMMFGVMLVAASLPVMFEQGLTRYGFWGYIIFRVASALLWLRVARANPHLRQTAWRYSFGQILIQ
GVWAIGAFLLPAWSAGAWVMVAIAVLGELLVPFFAEKAGATPWHRRHIIERFGLLNIIVIGETLLSSTHAIGASMQQGMH
GPMLILAGCGAIMGFALWWLYFCDVDHLDTIRRRRAFVWGYGHFIIFSAGAAVGSGLSVMVSAISAELSTETHTEAVHET
AHQVSHATATWAIAIPLALYVLGIWLVRDRYQLQNMQSTTLLLFSVLLLLTGFLPYAPLPATLLLVLCLVLRLQK

Sequences:

>Translated_395_residues
MSFLFKRHLRPLLARDRDQTHRAATQLELLFDLVVVIAIAAAAHGLSHTIEIGQPLLGSLQYGLAFFAIWWPWNLFTFFA
SSFDNDDAAYRLSVMVMMFGVMLVAASLPVMFEQGLTRYGFWGYIIFRVASALLWLRVARANPHLRQTAWRYSFGQILIQ
GVWAIGAFLLPAWSAGAWVMVAIAVLGELLVPFFAEKAGATPWHRRHIIERFGLLNIIVIGETLLSSTHAIGASMQQGMH
GPMLILAGCGAIMGFALWWLYFCDVDHLDTIRRRRAFVWGYGHFIIFSAGAAVGSGLSVMVSAISAELSTETHTEAVHET
AHQVSHATATWAIAIPLALYVLGIWLVRDRYQLQNMQSTTLLLFSVLLLLTGFLPYAPLPATLLLVLCLVLRLQK
>Mature_394_residues
SFLFKRHLRPLLARDRDQTHRAATQLELLFDLVVVIAIAAAAHGLSHTIEIGQPLLGSLQYGLAFFAIWWPWNLFTFFAS
SFDNDDAAYRLSVMVMMFGVMLVAASLPVMFEQGLTRYGFWGYIIFRVASALLWLRVARANPHLRQTAWRYSFGQILIQG
VWAIGAFLLPAWSAGAWVMVAIAVLGELLVPFFAEKAGATPWHRRHIIERFGLLNIIVIGETLLSSTHAIGASMQQGMHG
PMLILAGCGAIMGFALWWLYFCDVDHLDTIRRRRAFVWGYGHFIIFSAGAAVGSGLSVMVSAISAELSTETHTEAVHETA
HQVSHATATWAIAIPLALYVLGIWLVRDRYQLQNMQSTTLLLFSVLLLLTGFLPYAPLPATLLLVLCLVLRLQK

Specific function: Unknown

COG id: COG4292

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43996; Mature: 43864

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFLFKRHLRPLLARDRDQTHRAATQLELLFDLVVVIAIAAAAHGLSHTIEIGQPLLGSL
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH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HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA