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The map label for this gene is yqhC [H]

Identifier: 158334493

GI number: 158334493

Start: 1302972

End: 1303847

Strand: Direct

Name: yqhC [H]

Synonym: AM1_1317

Alternate gene names: 158334493

Gene position: 1302972-1303847 (Clockwise)

Preceding gene: 158334490

Following gene: 158334496

Centisome position: 20.03

GC content: 51.26

Gene sequence:

>876_bases
ATGTGTAAAATTATCGAGCTCATTGATCGACACGCAATTTCTGAGGGCGCGACAGAGACTCCTATTGAGGGATTGCAGCT
GTTTCGGACGAATCACCTTGTGGAGCGATTGCCTGGGGTGTACGACCCGAGTATTTGCGTGATTGTGCAGGGACAGAAGC
GGGCGTACTTGGATGGCACAACCCACATCTACGATAGAGATCAGTATTTGTGCAGTACTCTGCCTATACCTGCAGAGGCA
GAGGTGGTCGAGGCATCGCCAGAAAAACCCCTGCTTGGTCTTTTGCTGCGCCTTGAGACTCGAACCATGTTTGAGACGGT
ACTTGAGATGACGGCTCTGGATCGTGGCAGCGCCTCAAGAGCCGAAGTTGTGCCTGGGCTTACTGTGGCCAAGTGGGATG
AGGACTTTGCCACAGGGCTTCAACGCCTTTTGGAATTGTTGGATGATCCTGTTGCACTCAATATCCTCGGCAGTGGCAGG
CTTAAGGAATTGATGTTTGCGGTTCTTCGGGGTGAGGCTGGGGGCGCGTTTGTCCATGCATTTGGGGGAGGAATGCAGCA
GATATCGCGGGCATTGACTTTCCTGAACGCCAATCTTCATGAAGCGATCTCGATTGATGAGTTGGCTAAAGAGGCAGGAA
TGAGCCGCGCAGTGTTTCACCGCAAGTTCAAAGAAGTAACTACTTATTCCCCGATTCAGTTTATTAAGCTGCATCGTCTC
AATGAGGCATCAAGGCTGATTGTGAGTGGCTCTACTGCGGGGGATGCAGCAAATCGTGTGGGCTACTCTAGCCAATCTCA
ATTTAGTCGCGATTTCCGACGGTATTTTGGCAAATCCCCTTACCAATGGGGACTGGAACAGCGGTCTGAACAATAG

Upstream 100 bases:

>100_bases
CTTACTCCTAAATCAGCCGTATTAATCTTATTTTTTTGCCAATTTGTATCAATCTCAGGAAAAGATGGCGGAGGTGGGTC
ATCCTAGAACCATGAATAAT

Downstream 100 bases:

>100_bases
ACACATGAGTGGATCGAGGTGAGCGGCTATCCCATTGAGTAATGAGAGAAGCTAGAGGTCATAGTATGACCTCTAGCTAA
TCAACTCACTTGTTGAAGAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MCKIIELIDRHAISEGATETPIEGLQLFRTNHLVERLPGVYDPSICVIVQGQKRAYLDGTTHIYDRDQYLCSTLPIPAEA
EVVEASPEKPLLGLLLRLETRTMFETVLEMTALDRGSASRAEVVPGLTVAKWDEDFATGLQRLLELLDDPVALNILGSGR
LKELMFAVLRGEAGGAFVHAFGGGMQQISRALTFLNANLHEAISIDELAKEAGMSRAVFHRKFKEVTTYSPIQFIKLHRL
NEASRLIVSGSTAGDAANRVGYSSQSQFSRDFRRYFGKSPYQWGLEQRSEQ

Sequences:

>Translated_291_residues
MCKIIELIDRHAISEGATETPIEGLQLFRTNHLVERLPGVYDPSICVIVQGQKRAYLDGTTHIYDRDQYLCSTLPIPAEA
EVVEASPEKPLLGLLLRLETRTMFETVLEMTALDRGSASRAEVVPGLTVAKWDEDFATGLQRLLELLDDPVALNILGSGR
LKELMFAVLRGEAGGAFVHAFGGGMQQISRALTFLNANLHEAISIDELAKEAGMSRAVFHRKFKEVTTYSPIQFIKLHRL
NEASRLIVSGSTAGDAANRVGYSSQSQFSRDFRRYFGKSPYQWGLEQRSEQ
>Mature_291_residues
MCKIIELIDRHAISEGATETPIEGLQLFRTNHLVERLPGVYDPSICVIVQGQKRAYLDGTTHIYDRDQYLCSTLPIPAEA
EVVEASPEKPLLGLLLRLETRTMFETVLEMTALDRGSASRAEVVPGLTVAKWDEDFATGLQRLLELLDDPVALNILGSGR
LKELMFAVLRGEAGGAFVHAFGGGMQQISRALTFLNANLHEAISIDELAKEAGMSRAVFHRKFKEVTTYSPIQFIKLHRL
NEASRLIVSGSTAGDAANRVGYSSQSQFSRDFRRYFGKSPYQWGLEQRSEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=259, Percent_Identity=35.5212355212355, Blast_Score=158, Evalue=3e-40,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32373; Mature: 32373

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCKIIELIDRHAISEGATETPIEGLQLFRTNHLVERLPGVYDPSICVIVQGQKRAYLDGT
CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCC
THIYDRDQYLCSTLPIPAEAEVVEASPEKPLLGLLLRLETRTMFETVLEMTALDRGSASR
CEEECCCHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEVVPGLTVAKWDEDFATGLQRLLELLDDPVALNILGSGRLKELMFAVLRGEAGGAFVHA
HHHCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEH
FGGGMQQISRALTFLNANLHEAISIDELAKEAGMSRAVFHRKFKEVTTYSPIQFIKLHRL
HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHC
NEASRLIVSGSTAGDAANRVGYSSQSQFSRDFRRYFGKSPYQWGLEQRSEQ
CCHHEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCC
>Mature Secondary Structure
MCKIIELIDRHAISEGATETPIEGLQLFRTNHLVERLPGVYDPSICVIVQGQKRAYLDGT
CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCC
THIYDRDQYLCSTLPIPAEAEVVEASPEKPLLGLLLRLETRTMFETVLEMTALDRGSASR
CEEECCCHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEVVPGLTVAKWDEDFATGLQRLLELLDDPVALNILGSGRLKELMFAVLRGEAGGAFVHA
HHHCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEH
FGGGMQQISRALTFLNANLHEAISIDELAKEAGMSRAVFHRKFKEVTTYSPIQFIKLHRL
HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHC
NEASRLIVSGSTAGDAANRVGYSSQSQFSRDFRRYFGKSPYQWGLEQRSEQ
CCHHEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]